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I had a similar issue when I first received my R2, not sure if this applies to your machine though. Upon inspection I noticed that the filament drive gear was not properly aligned with the extruder feedtube which was causing the filament to be driven on the outer edge of the gear, making it push the filament at an accelerated speed. I then realigned the drive gear on the stepper motor shaft by using the feedtube as a sight and have had no problems since.
-Bob