Here is my basic thoughts for a "kit"
Make a simple L bracket to hold the extruder of choice from the gantry. There are tons of options but a simple NEMA17 motor bracket will work.
The idea here is that part replaces the current cast aluminum bracket that screws to the X axis linear slider block. You need to drill the linear block mounting pattern into the long leg of the L bracket. and come up with a way to attach the belt to that bracket at well (heck, you'd be surprised how well a couple of zip ties work!!!).
That gives you an extruder motor solidly mounted to the X carriage and in the correct orientation. This opens up huge possible directions in what extruder you can use.
Personally, I believe in keeping MakerBot with MakerBot (even though the new stuff sucks, there is something said for the older stuff).
So I would use any of the printable or even metal upgraded filament drives such as David's 3 in1 extruder upgrade for the filament drive section using an original MakerBot drive gear.
That said, a second choice would be any Wanhao Duplicator 4 V9 drive gear and plastic parts or Flash forge or whatever other brand.
I would use a MK7 style cooling block and heatsink, and a genuine all metal thermal barrier from Carl's upgrades. Alternatively, get a Wanhao or Flash forge extruder kit and cut the bar in half
Or don't and build the first dual extruder 5th gen.
Point is, the bracket gets sandwiched between the motor and the drive system and hotend parts. You might need slightly longer screws to thread into the motor but the sandwich is the best mounting system I can think of for adapting.
Alternatively, if you insist on going Reprap, you still use the bracket, you simply use a different filament drive.
For example, the SeeMe CNC EZ struder bracket system can hold any old J-head or other hotened
Not unlike this, except the bracket will be between the motor and the extruder, and the drive gear will be out a little further on the shaft