[maker-devel] Maker always fails to run on a particular chromosome.

[WIIE AY]

Hi,

Thanks for this excellent software.
However, when we annotated a rice genome (chr1-12) using Maker/3.01.03, the first round ran very well.
When we added the snap and gmhmm models in the second round, only chr04 always failed in 12 chromosomes.
Here is my chr4_run.log, stderr.out.(Maybe need maker_opts.ctl.)
Looking forward to your reply.
 

 maker_opts.ctl

 run.log

 stderr_73012967.err

THANKS 
Peter

[Carson Holt]

You have a number of initial GFF3 related errors. I think one of your input files has an issue somewhere. Likely a truncated line in the GFF3. You will have to find and fix the feature with issues, then delete any *.db files under the *.maker.output directory before restarting. That will force it to rebuild the database that maps the current GFF3 files.

Thanks,

Carson

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