ERROR: sourc`e conflict: validate_and_build_gene

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Onkar Mulay

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Oct 12, 2021, 9:23:29 AM10/12/21
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Hi,

When I convert gtf to gff3 I get this error.
ERROR: sourc`e conflict: validate_and_build_gene


Can anyone please provide a command using gffread, how to convert gtf to gff3.



Regards,
Onkar


Paul Jewell

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Oct 15, 2021, 2:28:40 PM10/15/21
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Hi Onkar,

Did you try to use the command references here / on the majiq site? https://groups.google.com/g/majiq_voila/c/XERKLK_gB1I/m/iNJcYe-lAAAJ

Can you please post the command you used  exactly? In most experiences I've had it might be more fruitful to simply search for a more up to date file which is already in gff3 format, but I can check if I can see what might be casing the error?

Onkar Mulay

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Oct 23, 2021, 11:34:59 AM10/23/21
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I have run the MAJIQ program successfully, thanks for the link

Regards,
Onkar
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