Using Majiq for non-identical read length in BAM file

[Sachin Pundhir]

Dear developers@Majiq,

Does Majiq required read length to be identical in the input BAM files? Since, this is a requirement in case of rMATS and MISO, I am curious..

Thanks.

[Jordi Vaquero]

Hello, 

No, Majiq does not require to have identical red length in the input BAM files. In the config file you just 

need to set readlen to the maximum readlength of your input files.

Thanks for your interest in our tool

Jordi

[Israel Gonzalez]

In the current version of MAJIQ, can you set the readlen to maximum? How do you do that?

[San Jewell]

Hello,

In recent versions of majiq this value is automatically calculated and you no longer need to provide it manually in the config file.

Thanks,

-San