Praveenkumar R
bamdirs=/home/praveenkumar/MAJIQQ/bam
genome=Homo
genome_path=/home/praveenkumar/reference_genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa
strandness=None
[experiment]
WT=WT_1
KO=KO_1
2024-04-21 21:02:58,369 (PID:27263) - INFO - ╔═══════════════════════════════════════════════════════════════╗
2024-04-21 21:02:58,369 (PID:27263) - INFO - ╠╡ ACADEMIC License applied
2024-04-21 21:02:58,369 (PID:27263) - INFO - ║ Name: Official Majiq Academic-only License ║
2024-04-21 21:02:58,369 (PID:27263) - INFO - ║ File: majiq_license_academic_official.lic ║
2024-04-21 21:02:58,369 (PID:27263) - INFO - ║ Expiration Date: Never ║
2024-04-21 21:02:58,370 (PID:27263) - INFO - ║ ║
2024-04-21 21:02:58,370 (PID:27263) - INFO - ╠╡ The academic license is for non-commercial purposes by ║
2024-04-21 21:02:58,370 (PID:27263) - INFO - ╠╡ individuals at an academic or not for profit institution. ║
2024-04-21 21:02:58,370 (PID:27263) - INFO - ╚═══════════════════════════════════════════════════════════════╝
2024-04-21 21:03:00,936 (PID:27263) - INFO - Parsing GFF3
2024-04-21 21:04:08,223 (PID:27263) - INFO - Adding Transcript Exons
2024-04-21 21:04:18,144 (PID:27263) - INFO - Reading bamfiles
2024-04-21 21:04:18,145 (PID:27263) - INFO - Detecting LSVs ngenes: 58051
2024-04-21 21:04:37,729 (PID:27263) - INFO - 0 LSV found
2024-04-21 21:04:40,141 (PID:27263) - INFO - MAJIQ Builder is ended successfully!
I have no clue why it not running.
2024-04-21 21:02:57,877 (PID:27263) - INFO - Majiq Build v2.5.6.dev1+g8423f68b
Command: /home/praveenkumar/Majiq_env_test/bin/majiq build /home/praveenkumar/reference_annotation/Homo_sapiens_GRCh38_86_con_from_gtf.gff3 -o /home/praveenkumar/MAJIQQ/output -c /home/praveenkumar/MAJIQQ/config_test.ini
My bam files and indexed files are in the same directory also my configure file.
i checked the gff file chromosome names are 1,2,3 like in my bam file.
Can you please help me with this. Thanks in advance.