Re: problems with installation

Message has been deleted

Denisa Bogdan

unread,

Nov 9, 2020, 11:02:59 AM11/9/20

to majiq_voila

Hi,

I have recently installed MAJIQ on my Mac (OSX Catalina). I was getting some different error messages but I believe what worked was

1. make sure you are using Python 3.7, not 3.8

2. make sure you have installed (and are compiling using) gcc9

Hope this helps.

Denisa

vineri, 6 noiembrie 2020, 02:29:48 UTC, Diljeet Kaur a scris:

Hello,

I am trying to install MAGIQ to my laptop. I have followed your instructions and made sure that I have all the requirements needed for installation. However, I keep getting the below error message when I try to install. I was wondering if you can advise me as to how I can resolve this?

Thank you!

  ERROR: Command errored out with exit status 1:
     command: /Users/kaurd2/magiq/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-install-oehtny5k/majiq/setup.py'"'"'; __file__='"'"'/private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-install-oehtny5k/majiq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-pip-egg-info-1f9kqdec
     cwd: /private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-install-oehtny5k/majiq/
  Complete output (47 lines):
  WARNING: The wheel package is not available.
  WARNING: The wheel package is not available.
  ERROR: Command errored out with exit status 1:
     command: /Users/kaurd2/magiq/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-wheel-rrih_ynk/cython/setup.py'"'"'; __file__='"'"'/private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-wheel-rrih_ynk/cython/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-wheel-4ny396q1
     cwd: /private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-wheel-rrih_ynk/cython/
  Complete output (7 lines):
  Unable to find pgen, not compiling formal grammar.
  usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
     or: setup.py --help [cmd1 cmd2 ...]
     or: setup.py --help-commands
     or: setup.py cmd --help

  error: invalid command 'bdist_wheel'
  ----------------------------------------
  ERROR: Failed building wheel for Cython
  ERROR: Failed to build one or more wheels
  Traceback (most recent call last):
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/installer.py", line 128, in fetch_build_egg
  subprocess.check_call(cmd)
  File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/subprocess.py", line 364, in check_call
  raise CalledProcessError(retcode, cmd)
  subprocess.CalledProcessError: Command '['/Users/kaurd2/magiq/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/tmpew0v93te', '--quiet', 'Cython==0.29.14']' returned non-zero exit status 1.

  During handling of the above exception, another exception occurred:

  Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/private/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/pip-install-oehtny5k/majiq/setup.py", line 162, in <module>
  setup(
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/__init__.py", line 143, in setup
  _install_setup_requires(attrs)
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/__init__.py", line 138, in _install_setup_requires
  dist.fetch_build_eggs(dist.setup_requires)
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/dist.py", line 695, in fetch_build_eggs
  resolved_dists = pkg_resources.working_set.resolve(
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/pkg_resources/__init__.py", line 781, in resolve
  dist = best[req.key] = env.best_match(
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1066, in best_match
  return self.obtain(req, installer)
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1078, in obtain
  return installer(requirement)
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/dist.py", line 754, in fetch_build_egg
  return fetch_build_egg(self, req)
  File "/Users/kaurd2/magiq/lib/python3.8/site-packages/setuptools/installer.py", line 130, in fetch_build_egg
  raise DistutilsError(str(e))
  distutils.errors.DistutilsError: Command '['/Users/kaurd2/magiq/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/var/folders/f4/_dz_rz3144l2clfq6lm0bp2drj9qxb/T/tmpew0v93te', '--quiet', 'Cython==0.29.14']' returned non-zero exit status 1.
  Problem was encounted during it hash extraction. Hash value disabled: No module named 'git'
  ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.