conda doesn't work

[Serghei Mangul]

Looks like conda doesn't work 

./conda create -n majiq_env -c http://majiq.biociphers.org/download/channel majiq

Solving environment: failed

CondaHTTPError: HTTP 404 NOT FOUND for url <http://majiq.biociphers.org/download/channel/noarch/repodata.json>

Elapsed: 00:00.344943

The remote server could not find the noarch directory for the

requested channel with url: http://majiq.biociphers.org/download/channel

As of conda 4.3, a valid channel must contain a `noarch/repodata.json` and

associated `noarch/repodata.json.bz2` file, even if `noarch/repodata.json` is

empty. please request that the channel administrator create

`noarch/repodata.json` and associated `noarch/repodata.json.bz2` files.

$ mkdir noarch

$ echo '{}' > noarch/repodata.json

$ bzip2 -k noarch/repodata.json

You will need to adjust your conda configuration to proceed.

Use `conda config --show channels` to view your configuration's current state.

Further configuration help can be found at <https://conda.io/docs/config.html>. 

[Alice Mayer]

I did it this way and it worked:

```

conda create --name MAJIQ python=3.6 pysam numpy cython
conda activate MAJIQ
export HTSLIB_INCLUDE_DIR=/home/u/u230707/miniconda3/envs/MAJIQ/lib/python3.6/site-packages/pysam/include/htslib/
export HTSLIB_LIBRARY_DIR=/home/u/u230707/miniconda3/envs/MAJIQ/lib/python3.6/site-packages/pysam/include/htslib/htslib/

pip install git+https://bitbucket.org/biociphers/majiq_stable.git#egg=majiq

```

see https://groups.google.com/d/msg/majiq_voila/is6UoZkvMU4/xq31VtTIBQAJ

[Jordi Vaquero]

Hello Serghei,

Majiq is not using a conda channel. It did in his first version on 0.9x but it is just using a pip command to a url to install now. In order to get the proper steps please sign up again to the web page and it will give you the installation steps.

 

 

Jordi

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