MAJIQ build error - no matching Bam file

[幸龍三郎]

Hello.

I tried to perform MAJIQ build.

But, the error occurred. 

I attached the log below. 

And, here is the build_config.ini.

[info]
bamdirs=~/STARref/
genome=hg38

[experiments]
con=sicon1_SRR1917389_1Aligned.sortedByCoord.out
cwc=siCWC1_SRR2052645_1Aligned.sortedByCoord.out

According to the error message, the path to Bam files may be wrong. 

But, these Bam and Bam.bai files are in STARref folder, meaning bamdirs.

This command is performed at STARref folder, and ini file, gtt3 file, and output folder are located in STARref folder.

Does anyone know how to solve this problem?

Regards,

Zabu

[San Jewell]

Hi Zabu,

Can you show an $ ls of the STARref folder?

Also can you try to use an absolute path in bamdirs= instead of relative? i.e. /home/<username>/STARref ?

Thanks,

-San