Voila alt3prime exon coordinates outputs not ordered correctly.

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d bogdanoff

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Apr 25, 2024, 2:52:26 PMApr 25
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Hello, 

I believe I found another bug in the voila output .tsvs, this time in the negative stranded events within the alt3prime.tsv files. 
Negative stranded events with the "spliced_with" column listing "E1" give the same coordinates for the "reference_exon_coord" and "spliced_with_coord" columns. This coordinate is also given in a backwards order: (ie. larger_coord- smaller_coord). This doesn't appear to be the structure given for outputs on the positive strand, for events spliced_with E2 events, or any events in alt5prime.tsv file.

Let me know if I can provide any more information about the issue. 

Thanks, 

Derek

d bogdanoff

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Oct 14, 2024, 7:22:13 PMOct 14
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Don't think this was addressed so bumping it up to the top 

San Jewell

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Oct 16, 2024, 1:43:14 PMOct 16
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Hi Derek,

There was another thread on this issue posted recently and I've been able to patch the problem. The new release should be available via the same download process shortly.

Thank you for reporting the issue!

-San
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