Installation failure: ** Segmentation violation signal raised. **

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Elton Vasconcelos

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Aug 12, 2021, 5:51:14 AM8/12/21
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  Dear MAJIQ developers,


Could anyone shed a light on solving this error that I got after trying to install MAJIQ witj:

$ pip install git+https://bitbucket.org/biociphers/majiq_academic.git#egg=majiq

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": internal error: ** The compiler has encountered an unexpected problem.

    ** Segmentation violation signal raised. **

    Access violation or stack overflow. Please contact Intel Support for assistance.

    

    compilation aborted for majiq/src/build.cpp (code 4)

    error: command 'icc' failed with exit status 4

    

    ----------------------------------------

Command "/nobackup/fbsev/bioinformatics-tools/majiq/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-i1be7p80/majiq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-sc0ywzrz/install-record.txt --single-version-externally-managed --compile --install-headers /nobackup/fbsev/bioinformatics-tools/majiq/include/site/python3.7/majiq" failed with error code 1 in /tmp/pip-install-i1be7p80/majiq/

############################################


Thanks very much in advance,

Best,

Elton

Jordi Vaquero

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Aug 12, 2021, 10:42:03 AM8/12/21
to majiq_voila, Elton Vasconcelos
Hi, 
sorry for the problem. Magiq has not been tested for intel compiler, but for gcc and clang. Is there any  way you can use one of those? This looks like an internal error. 

Jordi
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