Gargi Mishra
g++ -pthread -B /home/gargim/anaconda3/compiler_compat -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/gargim/anaconda3/include -fPIC -O2 -isystem /home/gargim/anaconda3/include -fPIC -DNPY_NO_DEPRECATED_API=0 -Irna_majiq/src/internals -Irna_majiq/c -I/tmp/pip-build-env-vve_ljz_/overlay/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include -I/home/gargim/env/include -I/home/gargim/anaconda3/include/python3.12 -c rna_majiq/src/build.cpp -o build/temp.linux-x86_64-cpython-312/rna_majiq/src/build.o -fopenmp -std=c++11
In file included from rna_majiq/src/build.cpp:792:
rna_majiq/src/internals/io_bam.hpp:8:10: fatal error: htslib/sam.h: No such file or directory
8 | #include "htslib/sam.h"
| ^~~~~~~~~~~~~~
compilation terminated.
error: command '/usr/bin/g++' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for rna-majiq
Building wheel for rna-voila (pyproject.toml) ... done
Created wheel for rna-voila: filename=rna_voila-2.5.7.dev1+g8ff62a93-py3-none-any.whl size=2512671 sha256=5ab4bf733852ae518aa9679fbc850d598357e0fd8de80bba356154715fcf5756
Stored in directory: /tmp/pip-ephem-wheel-cache-_bt4pm03/wheels/3c/bd/4e/4b56f2f296892fa55720c6dfd188d650fe8c1b413d1f417f37
Building wheel for gtfparse (pyproject.toml) ... done
Created wheel for gtfparse: filename=gtfparse-2.0.1-py3-none-any.whl size=15286 sha256=f1ffd8342f8c81a66e195a33d2d78c35cf1e62d755f0951b4ff05ace25bd4a84
Stored in directory: /home/gargim/.cache/pip/wheels/f5/39/84/d9a8a915a4618f8bac5360ca424cb8e12807ab9b754ae588d5
Building wheel for intervaltree (pyproject.toml) ... done
Created wheel for intervaltree: filename=intervaltree-3.1.0-py2.py3-none-any.whl size=26099 sha256=89fed4d6ce77bf66094225917f2a119730236f77fb712dc41d79226201ca4b95
Stored in directory: /home/gargim/.cache/pip/wheels/65/c3/c3/238bf93c243597857edd94ddb0577faa74a8e16e9585896e83
Building wheel for MarkupSafe (pyproject.toml) ... done
Created wheel for MarkupSafe: filename=MarkupSafe-1.1.1-cp312-cp312-linux_x86_64.whl size=17536 sha256=3393352fdceba4ad8613627f4ee4b3add7146bb4d0c12d10d46f746f36ae8328
Stored in directory: /home/gargim/.cache/pip/wheels/ff/6d/06/f08a8fbf292f9c43851e9d71174d98d1262f11ddaeb5dbe290
Building wheel for psutil (pyproject.toml) ... done
Created wheel for psutil: filename=psutil-5.6.7-cp312-cp312-linux_x86_64.whl size=220554 sha256=b8686ea3e82eb55cd449f4f841a0eeac49cff6decde9ec9282a0d875325d9ce5
Stored in directory: /home/gargim/.cache/pip/wheels/df/95/b0/b9d8f670b3288382410f2b69d6cd6a6e3beae67f072608dec5
Successfully built rna_majiq_meta rna-voila gtfparse intervaltree MarkupSafe psutil
Failed to build rna-majiq
ERROR: Could not bui
