some issue with voila tsv

[Lahat A]

Hi I am running this command:
voila tsv --file-name majiq/compare/tissueRename.kidney_organoid.status/wild_type-wild_type_corrected.deltapsi.voila.tsv --nproc 4 majiq/compare/tissueRename.kidney_organoid.status/wild_type-wild_type_corrected.deltapsi.voila majiq/majiq/splicegraph.sql 

and it gives me this error:

2022-02-16 17:40:59,868 (PID:8510) - INFO - Command: /mnt/storage/nobackup/nal176/PRPF8_RNAseq_Jan2022/env/bin/voila tsv --file-name majiq/compare/tissueRename.kidney_organoid.status/wild_type-wild_type_corrected.deltapsi.voila.tsv --nproc 4 majiq/compare/tissueRename.kidney_organoid.status/wild_type-wild_type_corrected.deltapsi.voila majiq/majiq/splicegraph.sql
2022-02-16 17:40:59,868 (PID:8510) - INFO - Voila v2.4.dev3+g85d0781.d20220211
2022-02-16 17:40:59,868 (PID:8510) - INFO - config file: /scratch/tmp7rte92kv
2022-02-16 17:41:00,289 (PID:8510) - ERROR - option values must be strings
Traceback (most recent call last):
  File "/mnt/storage/nobackup/nal176/PRPF8_RNAseq_Jan2022/env/lib/python3.10/site-packages/rna_voila/run_voila.py", line 437, in main
    config.write(args)
  File "/mnt/storage/nobackup/nal176/PRPF8_RNAseq_Jan2022/env/lib/python3.10/site-packages/rna_voila/config.py", line 268, in write
    config_parser.set(settings, 'analysis_type', analysis_type)
  File "/mnt/nfs/home/nal176/anaconda3/envs/snakemake/lib/python3.10/configparser.py", line 1204, in set
    self._validate_value_types(option=option, value=value)
  File "/mnt/nfs/home/nal176/anaconda3/envs/snakemake/lib/python3.10/configparser.py", line 1189, in _validate_value_types
    raise TypeError("option values must be strings")
TypeError: option values must be strings

Not sure what is wrong

[Paul Jewell]

Hello,

I am supposing this is a difference in how the configparser library handles overrides for non string values in python3.10. Would you be able to install voila using the supported version python3.8 to check whether the issue is resolved for you in this case?

Thanks.