bug in config.py

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Oliver Ziff

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Apr 8, 2022, 10:01:06 AM4/8/22
to majiq_voila
Hi there, just to let you know the config optional section in the documentation does not work with the current version of majiq. Gives rise to error:

  File "/majiq2/lib/python3.8/site-packages/rna_majiq/src/config.py", line 207, in __init__
    op_id, op_val = opt.split(":")
ValueError: not enough values to unpack (expected 2, got 1)

[optional]
Hippocampus1=strandness:None,
Liver2=strandness:reverse,

should to be modified to:

[optional]
Hippocampus1=strandness:none
Liver2=strandness:reverse

- commas removed from end of line
- None changed to lower case none
or alternatively the config.py needs correcting.
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