Hi there, just to let you know the config optional section in the documentation does not work with the current version of majiq. Gives rise to error:
File "/majiq2/lib/python3.8/site-packages/rna_majiq/src/config.py", line 207, in __init__
op_id, op_val = opt.split(":")
ValueError: not enough values to unpack (expected 2, got 1)
[optional]
Hippocampus1=strandness:None,
Liver2=strandness:reverse,
should to be modified to:
[optional]
Hippocampus1=strandness:none
Liver2=strandness:reverse
- commas removed from end of line
- None changed to lower case none
or alternatively the config.py needs correcting.