Genomes to Fields (G2F) Genotype by Environment Prediction Competition

1–15 of 15

This group provides a common place to discuss and share questions related to the Genomes to Fields (G2F) Genotype by Environment Prediction Competition. We encourage participants to use this forum to post questions as they might help other participants!

To the extent possible, please avoid direct emails to the organizers. It’s likely that your question is someone else’s question also.

Organizers will review the questions before making them public.

Thanks!

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Jacob Lamkey, Jacob washburn2

1/19/23

Releasing test set data

We do plan to release the observed test set data but are still finalizing the details of when and how

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Releasing test set data

We do plan to release the observed test set data but are still finalizing the details of when and how

1/19/23

Igor Kuivjogi Fernandes, Jacob washburn2

1/2/23

What would be a good RMSE?

Hi Igor, I am not sure there is a simple answer to that question. What is good or bad depends on what

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What would be a good RMSE?

Hi Igor, I am not sure there is a simple answer to that question. What is good or bad depends on what

1/2/23

12/27/22

Team Names EvalAI vs Google Form

A few questions have come up about team names: Q: Is the team name I entered in the google form

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Team Names EvalAI vs Google Form

A few questions have come up about team names: Q: Is the team name I entered in the google form

12/27/22

Igor Kuivjogi Fernandes, Jacob washburn2

12/27/22

Can we choose the best submission?

Thank you for the question. The order of your submissions will not be considered in the final

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Can we choose the best submission?

Thank you for the question. The order of your submissions will not be considered in the final

12/27/22

Philipp Heilmann, Jacob washburn2

12/19/22

Format of the target trait in test set

Hi Philipp, As you suggested, the challenge is to predict the mean yield of each hybrid in each

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Format of the target trait in test set

Hi Philipp, As you suggested, the challenge is to predict the mean yield of each hybrid in each

12/19/22

Ved Piyush, Joseph Gage5

12/12/22

How to open the VCF file?

Thank you for the clarifications and help, Joe! Best, Ved On Monday, December 12, 2022 at 8:36:52 AM

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How to open the VCF file?

Thank you for the clarifications and help, Joe! Best, Ved On Monday, December 12, 2022 at 8:36:52 AM

12/12/22

Richard Li, Jacob washburn2

12/5/22

About the trait data

Thank you for your inquiry. You are correct that much of the trait data is withheld based on it being

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About the trait data

Thank you for your inquiry. You are correct that much of the trait data is withheld based on it being

12/5/22

HH, Jacob washburn2

11/30/22

Genotypic data of parental lines?

Thank you for the inquiry. Unfortananly that data is not currently available in a form that is

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Genotypic data of parental lines?

Thank you for the inquiry. Unfortananly that data is not currently available in a form that is

11/30/22

Renaud Rincent, James Holland2

11/28/22

Yes: In 1_Training_Trait_Data_2014-2021.csv, column: Date_Planted In 2_Testing_Meta_Data_2022.csv,

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Yes: In 1_Training_Trait_Data_2014-2021.csv, column: Date_Planted In 2_Testing_Meta_Data_2022.csv,

11/28/22

Igor Kuivjogi Fernandes, Jacob washburn2

11/17/22

Difference between RMSE, rRMSE and nRMSE

Sorry for the confusion on this. We will remove rRMSE and nRMSE to avoid confusion. The metric

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Difference between RMSE, rRMSE and nRMSE

Sorry for the confusion on this. We will remove rRMSE and nRMSE to avoid confusion. The metric

11/17/22

ji zhogjie, Jacob washburn2

11/17/22

https://drive.google.com/drive/folders/1leYJY4bA3341S-JxjBIgmmAWMwVDHYRb?usp=sharing On Thursday,

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https://drive.google.com/drive/folders/1leYJY4bA3341S-JxjBIgmmAWMwVDHYRb?usp=sharing On Thursday,

11/17/22

Phillip Bax, Jacob washburn2

11/15/22

Yes. All of the publicly available data from G2F (posted on Cyverse) is allowed. On Tuesday, November

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Yes. All of the publicly available data from G2F (posted on Cyverse) is allowed. On Tuesday, November

11/15/22

11/14/22

Virtual or in person

Question: Will this be an all-virtual event, or will the teams come together in one place? Answer:

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Virtual or in person

Question: Will this be an all-virtual event, or will the teams come together in one place? Answer:

11/14/22

11/14/22

Participants for outside the USA

Question: Is the competition open to participants from outside the USA? Answer: Yes! Please

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Participants for outside the USA

Question: Is the competition open to participants from outside the USA? Answer: Yes! Please

11/14/22

11/14/22

Evaluation Metric: RMSE

Question: Why is the competition using mean RMSE across location instead of some other metric? Answer

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Evaluation Metric: RMSE

Question: Why is the competition using mean RMSE across location instead of some other metric? Answer

11/14/22

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