Undefined function or variable 'matlabrc'.

[Cyril]

Hello,

I have some errors which seems to be link with matlab which is not interact properly with cygwin. and I'm stuck for one week with that issue.

I've always this error when using the script make_coreg :

ERROR   : [ioroutines.cc[2443]]: Unable to open input file: fc_pos.in in source file: ioroutines.cc at line: 1914

ERROR   : [ioroutines.cc[2445]]: Missing a required file: fc_pos.in

Matlab is install on windows 8 64 bits btw.

If I set the MATLABPATH in the file StaMPS_CONFIG.bash (export MATLABPATH=$STAMPS_WIN/matlab:`echo $MATLABPATH`
); many functions are undefined on matlab, path seems totally deleted except for the new path setup and there are these errors :

Warning: Directory access failure: C:\cygwin32\home\cpoitevi\software\StaMPS_v3.3b1\matlab:\
Undefined function or variable 'matlabrc'.

Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
    at com.mathworks.mlwidgets.graphics.ModelStateFactory.createNoSelectionModelState(ModelStateFactory.java:242)
    at com.mathworks.mlwidgets.graphics.PlotToolSetFactory$3.parseComplete(PlotToolSetFactory.java:127)
    at com.mathworks.mlwidgets.graphics.ModelStateFactory$ProductInfoListener$1$1.run(ModelStateFactory.java:1023)
    at java.awt.event.InvocationEvent.dispatch(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
com.mathworks.jmi.MatlabException: Undefined function or variable 'userpath'.
    at com.mathworks.jmi.NativeMatlab.SendMatlabMessage(Native Method)
    at com.mathworks.jmi.NativeMatlab.sendMatlabMessage(NativeMatlab.java:219)
    at com.mathworks.jmi.MatlabLooper.sendMatlabMessage(MatlabLooper.java:120)
    at com.mathworks.jmi.Matlab.mtFeval(Matlab.java:1540)
    at com.mathworks.jmi.MatlabWorker.feval(MatlabWorker.java:197)
    at com.mathworks.appmanagement.GetAppInstallDirectoryWorker.doOnMatlabThread(GetAppInstallDirectoryWorker.java:20)
    at com.mathworks.appmanagement.GetAppInstallDirectoryWorker.doOnMatlabThread(GetAppInstallDirectoryWorker.java:7)
    at com.mathworks.appmanagement.AbstractAppManagementMatlabWorker.runOnMatlabThread(AbstractAppManagementMatlabWorker.java:21)
    at com.mathworks.jmi.MatlabWorker$2.run(MatlabWorker.java:79)
    at com.mathworks.jmi.NativeMatlab.dispatchMTRequests(NativeMatlab.java:364)

I've try many different things but I have no idea.... Do you have a proper solution for that or some idea to explore ?

Thank you.

Best regards.

Cyril

[Karsten Spaans]

This is most likely related to Matlab being installed under Windows. StaMPS was developed for UNIX, and you'll encounter quite a few incompatibilities you're going to have to resolve to run StaMPS under windows.

Karsten

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[Cyril]

Hi, thanks for your answer.

I've managed to make it work, the call of matlab scripts are not correct for windows :

OLD =>matlab -nojvm -nosplash -nodisplay < $STAMPS/matlab/batchjob.m >> make_coreg.log
NEW => matlab -nojvm -nosplash -nodisplay -r batchjob -logfile make_coreg.log

I also add a file "startup.m" in "C:\Program Files\MATLAB\R2013a\toolbox\local" with the path towards StaMPS scripts

addpath C:/cygwin32/home/user/software/StaMPS_v3.3b1/matlab
addpath C:/cygwin32/usr/local/bin

Good luck !
Cyril

[hamid reza Kohbanani]

Dear Cyril

Thank you for your guide. The question is why you have given path of ( C:/cygwin32/usr/local/bin). For me, this path is empty.

thanks

Hamid