Effective genome size for D.melanogaster (DM3)

[idonaldson]

Hi,

Can anyone suggest an effective genome size for D.melanogaster (DM3)?

Thank you!

Ian

[Hersh Parikh]

Hi Ian

 

   I guess some where around 70-80 % of the genome size you can give as effective genome size. So it could be near to 130-140 mb.

 

Regards

Hersh

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[Marco-Antonio MENDOZA-PARRA]

Dear Ian,
 
Whereas Hersh has a good guess concerning the effective genome size I would recommend to use the table that has published in the Peak-seq paper where they estimate a mappable genome size of 121,40 Mbs (72% total genome) for Drosophila Melanogaster.
greetings
                    Marco A.

----- Message d'origine -----
De: Hersh Parikh <hersh...@gmail.com>
Date: Jeudi, 25 Février 2010, 18:22
Objet: Re: [macs-announscement] Effective genome size for D.melanogaster (DM3)
À: macs-ann...@googlegroups.com

>

Marco Antonio Mendoza Parra, PhD


IGBMC
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marco....@igbmc.fr
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[Xue Dong]

I have a similar question. is there anybody know the effective genome size of arabidopsis(Col)?

thanks!

xue

Xue Dong

Max Planck Institute for Plant Breeding Research

Carl von Linné Weg 10

50829 Cologne

Germany



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