Error with the demo in R

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Carmen Ortega Santos

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Oct 30, 2019, 5:08:46 PM10/30/19
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Hey all,

I am running the demo for MaAslin2 on R. However, I keep getting the following error after running the following code:
fit_data <- Maaslin2(input_data, input_metadata, 'demo_output', transform = "AST", fixed_effects = c('diagnosis','dysbiosisnonIBD','dysbiosisUC','dysbiosisCD','antibiotics','age'), random_effects = c('site','subject'), standardize = FALSE)

ERROR that shows up on the console:
Error in data.table::fread(input_data, header = TRUE, sep = "\t") : 
  Input is empty or only contains BOM or terminal control characters

Does anyone come across the same error when trying the demo?

Any suggestions or comments are appreciated.

Carmen




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