Hi Sean,
Oh wow, the Minimus. Haven't thought about that board in years. Neat that people are still using them.
Not sure what the issue is from that description. What code are you running on the board? All I can think of would be something delaying the main USB task which would cause the USB connection to go unstable. Do the included LUFA demos work properly on the same boards? Can you show your application code somewhere so I can take a look?
- Dean
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