New feature: HTML Ontology reports

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Alan Ruttenberg

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Apr 8, 2007, 8:49:29 AM4/8/07
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bin/report http://biopax.org/release/biopax-level2.owl

will generate a file biopax-level2.html which gives a tree of classes
and properties linked to (on the same page) a short description of
the entity, with label, comment, manchesterish syntax, etc. It's
built out of the tooltips in the classtree and propertytree browsers,
on suggestion of Jonathan Rees.

Note that all the class expressions are the reasoned versions - they
may include more than what is explicitly stated in the ontology, and
that, like the rest of LSW, only works on the inferred version of the
ontology. It will get an error on inconsistent ontologies.

In the lisp code use

(write-ontology-report "http://biopax.org/release/biopax-
level2.owl" :fname "biopax-level2.html")

-Alan

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