uparse question

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fule...@gmail.com

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Feb 10, 2020, 5:10:26 AM2/10/20
to LotuS rRNA pipeline
Dear Falk,

I am dealing with an ITS dataset (earth microbiome amplification protocol) and I have tried dada2 (roughly 50% of ASVs unclasified at phylum level), usearch (the same for otus or zotus), but when using lotus I found that 85% of otus were classified at phylum level.
I wonder if there is a plan to allow lotus to use usearch/uparse zotus in the following updates. I had to move to ASVs because reviewers asked me to do that.

Regards,

Manuel
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