locuszoom

One possibility would be to check that the correct genome build is specified, as otherwise your

The short answer is that you'll need to create a custom layout, in which you override some of the

I have a local copy of the original locuszoom on my machine that I use for production batch runs. I

thank you! i figured it out On Thu, 5 Sep 2024 at 19.26 Andrew Boughton <abo...@umich.edu>

Thanks for the question. This may be helpful: https://my.locuszoom.org/about/#missing-ld -Andy

Congratulations on your tool, I really like it. However, I have a problem. When doing a locus zoom of

Short version: for extra columns, you will need a custom parser function that returns all fields If

I carefully read the requirements and found the missing steps. I forgot to sort by position. 在2024年5月

In my experience, this invariably means that the alleles are not properly aligned to REF/ALT . ie

For format instructions, see these instructions (PLINK 1.9. LD tab). https://statgen.github.io/

I would like to report that the LD was successfully colored when I used LocusZoom, not LocalZoom. I

hi, have you removed unnecessary tag from pval column, before making plot.... if so, then filter out

***Update; please disregard. Not a site issue as you anticipated. User error; my previous file was

It's been a while, but as far as I recall, UI should always show what the user selected on input.

Thanks for the update Andy. FWIW: Actually, late yesterday I checked and I WAS able to log in without

Greetings, This is a very broad question- it's a bit hard to suggest a solution without an idea

We will be performing scheduled maintenance on the server hosting my.locuszoom.org and related API

Thanks. Two notes: first, based on the JS there may be a section of your code that you are not

Hi Andrew, Thank you so much for the quick answer. I have made public the GWAS on LocusZoom webpage (

The syntax might depend slightly on which version of locuszoom you are using and what fields are in

fyi, i managed to make it work const stateUrlMapping = {chr: "chrom", start: "start

Hi, there: I have a couple of SNPs. I want to quickly see what genes are around them, and if there is

Removing line 319 in your screenshot might be a start. But for other lines of code, you'll need

Greetings all. We have received notice that our servers and sites are restored. Apologies for the

As mentioned elsewhere in the list, we are currently experiencing a severe university wide internet

UM campus internet connectivity is currently experiencing a major outage that is affecting LocusZoom

Dear Locuszoom Groups: I have come across a problem. I extract two .txt file of chromosome 7 and

Dear Ran Xu: I have come across the same problem. I'm wandering if you have solved this problem?

Greetings, I have cleaned up old files on the server to free up storage. However, please note that

https://genome.sph.umich.edu/wiki/LocusZoom_Standalone#Quick_Start_.28Requirements.29 On Monday, May