GC lambda

10 views
Skip to first unread message

EG

unread,
Jun 16, 2025, 11:53:07 AMJun 16
to locuszoom
Hi, 
Where can I find the formula for GC lambda at different percentiles? LocusZoom web app displays it ("Genomic Control lambda calculated based on the 50th percentile (median), 10th percentile, 1st percentile, and 1/10th of a percentile"). 
The formula 'median(qchisq(p, df=1, lower.tail=FALSE)) / qchisq(0.5, 1)' works for 50th percentile, but I am unable to modify it appropriately to match the values for other percentiles as displayed on the web app (an example: https://my.locuszoom.org/gwas/19554/).
Thanks

locuszoom

unread,
Jun 16, 2025, 12:13:48 PMJun 16
to locuszoom
Reply all
Reply to author
Forward
0 new messages