Dear LocusZoom admin,
First off, here is how my input file is formatted:
CHR POS REF ALT AF P
1 23197 TTAAAA T 0.0072 0.4903
1 132991 G A 0.0034 0.6189
I specify AF for Frequency, checking "ALT" as the effect allele.
However, when I do this, I get a validation error saying that my SNPs are not in numerical order (they are).
When I don't specify AF, I am able to successfully upload my data to LocusZoom.
I'm not sure what's going wrong. Could you please help?
Thank you,
Josh