locuszoom

Hi, My locuszoom plot have both triangle and circle points. However, as all the variants I uploaded

Thanks for the question! I'm glad you found these tools useful. The basic codebase for the entire

Thanks for the note. It appears the correct link is: https://github.com/statgen/locuszoom/blob/

Hi, I'm trying to integrate, LocusZoom into out web Application and show this study information

It is here: https://github.com/statgen/locuszoom-hosted/blob/d0a94e22e902de247531f019ef414041219ef4dc

One of the components in our server appears to have failed and our admin is working on getting a

One possibility would be to check that the correct genome build is specified, as otherwise your

The short answer is that you'll need to create a custom layout, in which you override some of the

I have a local copy of the original locuszoom on my machine that I use for production batch runs. I

thank you! i figured it out On Thu, 5 Sep 2024 at 19.26 Andrew Boughton <abo...@umich.edu>

Thanks for the question. This may be helpful: https://my.locuszoom.org/about/#missing-ld -Andy

Congratulations on your tool, I really like it. However, I have a problem. When doing a locus zoom of

Short version: for extra columns, you will need a custom parser function that returns all fields If

I carefully read the requirements and found the missing steps. I forgot to sort by position. 在2024年5月

In my experience, this invariably means that the alleles are not properly aligned to REF/ALT . ie

For format instructions, see these instructions (PLINK 1.9. LD tab). https://statgen.github.io/

I would like to report that the LD was successfully colored when I used LocusZoom, not LocalZoom. I

hi, have you removed unnecessary tag from pval column, before making plot.... if so, then filter out

***Update; please disregard. Not a site issue as you anticipated. User error; my previous file was

It's been a while, but as far as I recall, UI should always show what the user selected on input.

Thanks for the update Andy. FWIW: Actually, late yesterday I checked and I WAS able to log in without

Greetings, This is a very broad question- it's a bit hard to suggest a solution without an idea

We will be performing scheduled maintenance on the server hosting my.locuszoom.org and related API

Thanks. Two notes: first, based on the JS there may be a section of your code that you are not

Hi Andrew, Thank you so much for the quick answer. I have made public the GWAS on LocusZoom webpage (

The syntax might depend slightly on which version of locuszoom you are using and what fields are in

fyi, i managed to make it work const stateUrlMapping = {chr: "chrom", start: "start

Hi, there: I have a couple of SNPs. I want to quickly see what genes are around them, and if there is

Removing line 319 in your screenshot might be a start. But for other lines of code, you'll need

Greetings all. We have received notice that our servers and sites are restored. Apologies for the