lobSTR user group

Hello, I'm wondering lobSTR would be suitable for SSR genotyping in autopolyploid species? Ie

In case anyone is also curious about this, I have contacted 1000 Genomes about this and they have

Hi Becky, lobSTR is no longer actively maintained. I encourage you to checkout HipSTR, which has a

Hello, I encourage you to use HipSTR instead, which has many new features and is more reliable: https

Dear Nevena, Please try using HipSTR instead: https://github.com/tfwillems/HipSTR lobSTR is no longer

If all the reads are the same readgroup, you could use AddOrReplaceReadgroups from Picard tools (

Hello Anastassiya! I need to extract the genotypes from the autosomal STRs from de 1000 genomes

Hi everyone!! Someone please could help me?? I need the autosomal STRs genotypes from 1000 genomes

Hello I am having an issue visualizing the BAM files generated through the lobSTR alignment step in

Hi Is there somewhere I can download pre-generated noise models to use in allelotype? I can't

Dear Author, I have generated VCF file for lobSTR and use vcftools to get STR frequency (see below):

Dear all, lobSTR has been an important tool for my projects. However, my new dataset has hg38 as

Thanks for your answer, I was using both tools! 2018-09-05 17:37 GMT+02:00 Melissa Gymrek <melissa

Hello, I'm trying to use lobSTR but I get an error in the alignment step of BAM files, right

I already posted this on the GitHub a few weeks ago, so this is reposting it here to see if anyone

Hello, Would you please add vWA to your CODIS STRs reference table and update the file so when I run

Hi all, I am now using lobstr in generating SSR data. I have several vcf files and would like to

Hello, lobSTR (and more recently, HipSTR (https://github.com/tfwillems/HipSTR) which I suggest you

Hi, If I need to do the alignment from the scratch, should i use the build-in lobSTR or external BWA-

These aren't the crustaceans you're looking for. (this list is for the bioinformatics

These aren't the crustaceans you're looking for. (this list is for the bioinformatics

Hi Emma, This means there were no alternate alleles found, so every sample is homozygous for the

Hi Melissa and All In my VCF file of microsatellite loci called by lobSTR, there are some loci that

Hi Melissa and All I'm having a vcf file of microsatelites generated by lobSTR. My file needs

Hi all, My fastq reads files contain different length of reads (most are 100bp) since low quality

Hi there, Can anyone from LOBSTR support assist? LOBSTR doesn't work for me as well... I cannot

Hi guys we are now using lobstr for MSI status detection for human NGS data generated from illumina

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