Bug#1016346: pycorrfit: FTBFS: make[1]: *** [debian/rules:46: override_dh_auto_build] Error 1

[Lucas Nussbaum]

Source: pycorrfit
Version: 1.1.7+dfsg-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220728 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> cd doc && \
> faketime -f "2019-12-04 13:19:32+00:00" pdflatex -synctex=1 -interaction=nonstopmode PyCorrFit_doc.tex && \
> bibtex PyCorrFit_doc.aux && \
> faketime -f "2019-12-04 13:19:32+00:00" pdflatex -synctex=1 -interaction=nonstopmode PyCorrFit_doc.tex && \
> faketime -f "2019-12-04 13:19:32+00:00" pdflatex -synctex=1 -interaction=nonstopmode PyCorrFit_doc.tex
> This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
> (./PyCorrFit_doc.tex
> LaTeX2e <2022-06-01> patch level 5
> L3 programming layer <2022-07-15>
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrartcl.cls
> Document Class: scrartcl 2022/07/04 v3.37 KOMA-Script document class (article)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlogo.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/tocbasic.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize12pt.clo)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/typearea.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/utf8x.def))
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/ucs.sty
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-global.def))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
> (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)
> (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/siunitx/siunitx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/translations/translations.sty
> (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/cite/cite.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/subfig/subfig.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption-koma.sto))))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)
> (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def))
> (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
>
> Package hyperref Warning: Unexpected value for option `pdftex'
> (hyperref) is ignored on input line 4045.
>
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/was/upgreek.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/doi/doi.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> No file PyCorrFit_doc.aux.
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
> (/usr/share/texlive/texmf-dist/tex/latex/translations/translations-basic-dictio
> nary-english.trsl)
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/bookmark/bookmark.sty
> (/usr/share/texlive/texmf-dist/tex/latex/bookmark/bkm-pdftex.def))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-0.def)
> No file PyCorrFit_doc.toc.
> ! Argument of ? has an extra }.
> <inserted text>
> \par
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> ! Argument of ? has an extra }.
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> ! Argument of ? has an extra }.
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> ! Argument of ? has an extra }.
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> Runaway argument?
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> ! Argument of ? has an extra }.
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> Runaway argument?
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> ! Paragraph ended before ? was complete.
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> Runaway argument?
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> ! Paragraph ended before ? was complete.
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> Runaway argument?
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> Runaway argument?
> ! Paragraph ended before ? was complete.
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> Runaway argument?
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> <to be read again>
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>
> (That makes 100 errors; please try again.)
> ! ==> Fatal error occurred, no output PDF file produced!
> Transcript written on PyCorrFit_doc.log.
> make[1]: *** [debian/rules:46: override_dh_auto_build] Error 1


The full build log is available from:
http://qa-logs.debian.net/2022/07/28/pycorrfit_1.1.7+dfsg-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220728;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220728&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

[Andreas Tille]

Control: tags -1 help

Hi,

Am Fri, Jul 29, 2022 at 08:41:23PM +0200 schrieb Lucas Nussbaum:
> > (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-0.def)
> > No file PyCorrFit_doc.toc.
> > ! Argument of ? has an extra }.
> > <inserted text>
> > \par
> > l.144 \newpage

I was able to reproduce this error with the small LaTeX file:


$ cat test.tex
\documentclass[]{scrartcl}
\usepackage[utf8x]{inputenc}
\usepackage{hyperref}
\begin{document}
Bla
\end{document}

$ pdflatex test.tex
...
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./PyCorrFit_doc.aux) (/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
(./PyCorrFit_doc.out) (./PyCorrFit_doc.out)
(/usr/share/texlive/texmf-dist/tex/latex/bookmark/bookmark.sty
(/usr/share/texlive/texmf-dist/tex/latex/bookmark/bkm-pdftex.def))
! Argument of � has an extra }.
<inserted text>
\par
l.6 \end{document}

?
! Emergency stop.
<inserted text>
\par
l.6 \end{document}

! ==> Fatal error occurred, no output PDF file produced!

If I subsitute s/utf8x/utf8/ in line 2 the test file builds fine.
However, in the full LaTeX source fails later with:

...
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...

l.288 Name & \textbf{TIR (□x$\upsigma$/Exp.) 3D}


So if someone finds a clue how to build this file properly


\documentclass[]{scrartcl}
\usepackage[utf8]{inputenc}
\usepackage{hyperref}
\begin{document}
Bla \textbf{TIR (□x$\upsigma$/Exp.) 3D}
\end{document}


the bug can be fixed.

Kind regards

Andreas.

--
http://fam-tille.de

[Étienne Mollier]

Hi Andreas,

Andreas Tille, on 2022-08-04:

> So if someone finds a clue how to build this file properly
>
>
> \documentclass[]{scrartcl}
> \usepackage[utf8]{inputenc}
> \usepackage{hyperref}
> \begin{document}
> Bla \textbf{TIR (□x$\upsigma$/Exp.) 3D}
> \end{document}
>
>
> the bug can be fixed.

The unicode character for the square box □ is not defined, but
you can replace it by: \Box{}. In addition this requires to use
the package "latexsym", and to be written in mathematical
context, so \(\Box\), or $\Box$ if you prefer sticking to the
style of the author.

Once this is done, pdflatex chokes on $\upsigma$ which looks to
originate from TeX StackExchange[1], so maybe the \Box{} thing
will be sufficient in the context of the original document. But
if you also cannot render the \upsigma thing, then maybe try a
regular \sigma. A working test document looks like:

\documentclass[]{scrartcl}
\usepackage[utf8]{inputenc}
\usepackage{hyperref}

\usepackage{latexsym}
\begin{document}
Bla \textbf{TIR (\(\Box\)x$\sigma$/Exp.) 3D}
\end{document}

Once rendered, your test document looks like:
_____ _ _________
Bla TIR (□xσ/Exp.) 3D

with the overline figuring a bold face. I don't know for sure
this is the expected result, but fair enough. I suspect the
initial intent was to get the whole "TIR.*3D" into nice bold
font.

[1]: https://tex.stackexchange.com/questions/197574/upright-boldface-lowercase-greek-math-symbols-with-cbgreek-glyphs

Hope this helps,
--
Étienne Mollier <emol...@emlwks999.eu>
Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
Sent from /dev/pts/2, please excuse my verbosity.