Pinchpoint

[DOMINGO ALBERTO ALVAREDO CASTRO]

Good Morning,

I'm doing a work about corridors through Linkage Mapper. I have several problems and I would thank you to guide me. 

When I execute Linkage Mapper the programme tells about a problem, but it works results. Barrier and Centrality are realized correctly. However, when, I try to execute Pinchpoint doesn't get. First, it writes the resistance map cannot be 0; but after changing, it begins to work, but finally find more problems, writing next:

  Mapping pinch points in individual corridors

using Circuitscape.

 

---------------------------------

If you try to cancel your run and the Arc dialog hangs,

you can kill Circuitscape by opening Windows Task Manager

and ending the cs_run.exe process.

---------------------------------

 

Processing link ID #2. Resistance map has 768 nodes.

     Calling Circuitscape:

          --- Reading maps ---

          --- Resistance/conductance map has 768 nodes ---

          --- Solving focal pair 1 of 1 ---

          --- Graph has 768 nodes, 2 focal nodes and 23 components. ---

          --- Solved focal pair 1 of 1 ---

          --- Job took 0 minutes 0 seconds to complete. ---

Finished with link ID #2. 1 out of 11 links have been processed.

That took 20 seconds.

 

Processing link ID #3. Resistance map has 13 nodes.

     Calling Circuitscape:

          --- Reading maps ---

 

Circuitscape failed.

      Traceback (most recent call last):

        File "csrun.py", line 13, in <module>

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 31, in compute

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 146, in compute_raster

        File "circuitscape\profiler.pyc", line 212, in wrapper

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 974, in load_maps

        File "circuitscape\io.pyc", line 371, in read_point_map

      RuntimeError: Less than two valid focal nodes found. Please check focal node location file.

     

     

 

Circuitscape failed. See error information above.

Trying again in 10 seconds.

     Calling Circuitscape:

          --- Reading maps ---

 

Circuitscape failed.

      Traceback (most recent call last):

        File "csrun.py", line 13, in <module>

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 31, in compute

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 146, in compute_raster

        File "circuitscape\profiler.pyc", line 212, in wrapper

        File "circuitscape\profiler.pyc", line 144, in wrapper

        File "circuitscape\compute.pyc", line 974, in load_maps

        File "circuitscape\io.pyc", line 371, in read_point_map

      RuntimeError: Less than two valid focal nodes found. Please check focal node location file.

     

     

 

Circuitscape failed. See error information above.

 

---------------------------------

****Failed in step 8. Details follow.****

---------------------------------

Python error on **line 289** of s8_pinchpoints.py in Linkage Mapper Version 1.1.0:

SystemExit: 1

---------------------------------

Python error on **line 165** of circuitscape_master.py in Linkage Mapper Version 1.1.0:

SystemExit: 1

Completed script PinchMapper...

Failed to execute (PinchMapper).

Failed at Thu Jan 04 12:20:21 2018 (Elapsed Time: 47.00 seconds)

Thank you very much for your attention.

Regards¡¡¡

Domingo Alvaredo

[annie.p...@consbio.org]

Hi Domingo,

Would you be able to send your input layers (the cores and resistance surface) to me? The error indicates that there may be invalid IDs for your core areas, and I'd like to check your inputs to confirm that that is the issue or if it is something else.

Thanks,
Annie Prisbrey

[serinus...@gmail.com]

Hi Annie

I try to execute Pinchpoint but I get the same Domingo's error. Can I mail you my layers  (cores, resistance matrix and log file)? these are too large to send by this forum. 

You can explain to me how I can find these kinds of errors to check in other files that have failed.

Thanks for your help