inclusive_scan

[edwi...@gmail.com]

Hi,

I am running a model and the data I need to fit to is the sum of one of the state variables. I am trying to use inclusive_scan to get the sum of the variables, but cannot figure out how to do it. For example, when I try to compile the attached example file I get the following error:

```

libbi sample --model-file SEEIIR2.bi

Warning: model name does not match model file name

Error: undef error - Error: undef error - Error: var.undef error - undefined variable: b

```

If I comment out line 105 (with the inclusive_scan) all works fine. What am I doing wrong here? Any pointers would be appreciated.

Kind regards, Edwin

[Lawrence Murray]

Hi Edwin,

I've just pushed some changes that I think should fix this for you. You can get them from the latest version in the git repository.

If you are already using the development version then a "git pull origin master" should pull them down for you, otherwise you will need to check out from scratch with "git clone https://github.com/libbi/LibBi.git" and install.

If you need any help with this do let me know.

Regards,

Lawrence

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[edwi...@gmail.com]

Thank you, that has solved the issue.

Best wishes, Edwin