libStatGen versions 1.07 and 1.07 are available

[mkt...@umich.edu]

libStatGen versions 1.0.7 & 1.0.8 are now available.

Version 1.0.7

General Updates:

• Add operator== to StringIntHash
• Cleanup compiling for files that are just headers with no .cpp
• Update Makefile TOOLOBJ to handle fortran
• ReferenceSequence.h fix compile problem on upgraded system
• Add Makefile.extlib for compiling libraries that use libStatGen

BAM Updates:

• Update to allow copying SamHeaderRecords and automatically update the SQ ReferenceInfo
• Update SamFileHeader::getReferenceInfo() to return a SamReferenceInfo reference rather than ptr
• Update SamRecord::getStringTag to return a const string pointer instead of just a string pointer
• Update SamCoordOutput to add flushAll method

Version 1.0.8 

• Add VCF file handling (merged the vcf branch from the libStatGen github repository)
• Add support for reading Tabix files
• Add ReusableVector class that holds vectors that will remove only the last or be reset & reused without clearing memory.

Version 1.0.8 includes all the updates in version 1.0.7.  I am releasing both just in case anyone specifically wants to exclude the VCF updates.

Since that is such a big change, I felt it would be good to have a release prior to that merge.

If you are interested in either of these versions, they can be downloaded at:

http://genome.sph.umich.edu/wiki/LibStatGen_Download

Let me know if you have any questions.

Mary Kate Wing