As an experiment, I commented out the code for hiding the toolbar. This was used for "kinds" that didn't need a toolbar. The main one used to be TEXT, but now we've decided that TEXT nodes ought to have the toolbar after all. Since I commented out the code, I haven't seen any of these error messages. This is preliminary and not in the version you just brought into devel by hand.
I'm supposing that the problem will still show itself for other node types where having a toolbar doesn't make sense, like "@pyplot", "@svg" nodes and the like. I will probably remove them in a future version, since we won't need many of them, but a few probably need to stay. So there will be more work ahead on this issue, but maybe this fix will take care of most of the cases.