looking for a singularity image for leafcutter

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phoenix Liu

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Sep 23, 2024, 11:53:29 AM9/23/24
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Hi all,

I am working in the data center and our researchers need to install the leafcutter onto the HPC system. I found a docker image here: 


However with using the image it reports the error:

NFO: Convert SIF file to sandbox...
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
Error in library(optparse) : there is no package called 'optparse'
Execution halted
INFO: Cleaning up image...

It seems the image is lack of some R packages. I am wondering whether you guys can suggest some link to download a workable docker/singularity image?

Thanks,

Fenglai
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