You should use an
LinkFilterPrefix Add only uris with matching prefix to queue.
rather than teh LinkFilterDefault.
This shoudl ensure that you only follow owl:sameAs links.
Regarding filtering of extracted triples:
1) download everything and filter afterwards
2) Implement a SinkCallback which has the filter (we would even like to integrate such a class into the ldpsider code if you woudl share it)
Regarding the last problem. can you provide some information , what makes you think the program starves at idle state?
Best