Hello Andrew,
Happy to hear you are using LAX and LAZ to have fast spatial area of interest queries on compressed LiDAR.
Two things
(1) it is not possible to change LAZ files in-place as they need to be decompressed and recompressed which may result in different file sizes.
(2) lasindex only reads the LAS / LAX points but does not write them. It does change their point_source_ID on read (implemented as a transform) but that is not stored back to file.
(3) the new LASlayers concept of LAStools will be able to do such small LiDAR edits very concisely. Stay tuned for ELMF 2014.
Martin
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