Hello Aija,
as Tobias pointed out it seems that your different LiDAR files are not matching each other. What is the source of the three different files? Is each file from a different flight line / trajectory? In this case you could use lasoverlap to create a visualization "from above" how bad the miss-alignment is:
This is the call when each file is a separate flightline / trajectory:
lasoverlap -i flightlines\*.laz -faf -merged ^
-step 2 -min_diff 0.1 -max_diff 0.4 ^
-odir quality -o overlap.png
This is the call when each file is a tile (containing points from multiple flight lines) *with* flightline numbers stored in the point source ID field of each point:
lasoverlap -i flightlines\*.laz ^
-step 2 -min_diff 0.1 -max_diff 0.4 ^
-odir quality -opng ^
-cores 4
This is the call when each file is a tile (containing points from multiple flight lines) *without* flightline numbers stored in the point source ID field of each point but with proper GPS time stamps
lasoverlap -i flightlines\*.laz ^
-step 2 -min_diff 0.1 -max_diff 0.4 ^
-recover_flightlines ^
-odir quality -opng ^
-cores 4
Each time '-step 2' means that the calculation of miss-alignment is done per 2 by 2 meter area and that elevation differences until 0.1 meter are okay (colored white) but elevation differences above 0.4 meter colored deep red / blue and elevation differences between 0.1 and 0.4 receive a shading from white to red/blue.
Regards,
Martin