Major problem with Oneiric 11.10 freezing

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Tom Bell

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Feb 12, 2012, 11:49:43 PM2/12/12
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Most of the time when I start a program, Thunderbird, Firefox, Dolphin,
etc., it will delay anywhere from 2 to 5 minutes and even then there is
no guarantee that it will actually start. I have 3 screen captures that
illustrate the problem and I will upload them to anyone who is interested.
Below is as much information as I could think to send. If anyone wants
more information, please be specific.
Thank you!

I have:
tommy@kubuntu:~$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 11.10
Release: 11.10
Codename: oneiric

Linux kubuntu 3.0.0-15-generic #26-Ubuntu SMP Fri Jan 20 17:23:00 UTC
2012 x86_64 x86_64 x86_64 GNU/Linux

tommy@kubuntu:~$ lshw |grep -nA 10 cpu
WARNING: you should run this program as super-user.
12: *-cpu
13- product: AMD Athlon(tm) 64 X2 Dual Core Processor 6400+
14- vendor: Hynix Semiconductor (Hyundai Electronics)
15- physical id: 2
16: bus info: cpu@0
17- width: 64 bits
18- capabilities: fpu fpu_exception wp vme de pse tsc msr pae
mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2
ht syscall nx mmxext fxsr_opt rdtscp x86-64 3dnowext 3dnow rep_good nopl
extd_apicid pni cx16 lahf_lm cmp_legacy svm extapic cr8_legacy

8G memory


tommy@kubuntu:~$ lshw |grep -nA 10 VGA
WARNING: you should run this program as super-user.
115: description: VGA compatible controller
116- product: G92 [GeForce 9800 GT]
117- vendor: nVidia Corporation
118- physical id: 0
119- bus info: pci@0000:01:00.0
120- version: a2
121- width: 64 bits
122- clock: 33MHz
123- capabilities: vga_controller bus_master cap_list rom
124- configuration: driver=nvidia latency=0
125- resources: irq:16 memory:fa000000-faffffff
memory:e0000000-efffffff memory:f8000000-f9ffffff ioport:ac00(size=128)
memory:fbfe0000-fbffffff
WARNING: output may be incomplete or inaccurate, you should run this
program as super-user.


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Basil Chupin

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Feb 13, 2012, 12:12:48 AM2/13/12
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On 13/02/12 15:49, Tom Bell wrote:
> Most of the time when I start a program, Thunderbird, Firefox,
> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
> then there is no guarantee that it will actually start. I have 3
> screen captures that illustrate the problem and I will upload them to
> anyone who is interested.
> Below is as much information as I could think to send. If anyone
> wants more information, please be specific.
> Thank you!

When you ask a question like this and have some screenshots to
illustrate your problem, just like you have now, then post them to:

picpaste.com

and simply include the URL(s) pointing to the screenshots. This way you
only upload them once and everybody has access them to see what you are
talking about.

BC

--
Aspire to inspire before you expire.

Nils Kassube

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Feb 13, 2012, 1:02:33 AM2/13/12
to kubunt...@lists.ubuntu.com
Tom Bell wrote:
> Most of the time when I start a program, Thunderbird, Firefox,
> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
> then there is no guarantee that it will actually start.

It could be a failing harddisk. Have a look at "/var/log/syslog" if
there is any hint. Or it could be a network share which is not
reachable, but I think that in this case the application should finally
start. Again, there should be a hint in "/var/log/syslog".


Nils

Tom Bell

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Feb 13, 2012, 2:33:04 AM2/13/12
to kubunt...@lists.ubuntu.com
On 02/13/2012 12:12 AM, Basil Chupin wrote:
> On 13/02/12 15:49, Tom Bell wrote:
>> Most of the time when I start a program, Thunderbird, Firefox,
>> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
>> then there is no guarantee that it will actually start. I have 3
>> screen captures that illustrate the problem and I will upload them to
>> anyone who is interested.
>> Below is as much information as I could think to send. If anyone
>> wants more information, please be specific.
>> Thank you!
>
> When you ask a question like this and have some screenshots to
> illustrate your problem, just like you have now, then post them to:
>
> picpaste.com
>
> and simply include the URL(s) pointing to the screenshots. This way
> you only upload them once and everybody has access them to see what
> you are talking about.
>
> BC
>
Thanks for the help!
The files have been uploaded:

http://www.picpaste.com/snapshot3-SMzt9oc1.png
http://www.picpaste.com/snapshot4-NvZOGk5m.png
http://www.picpaste.com/snapshot5-0oDMMFaI.png
<http://www.picpaste.com/snapshot5-0oDMMFaI.png>
One thing to note: these screenshots are completely unretouched, no Photoshop!
You will note the max out of both the CPUs while "top" shows little simultaneous usage of the CPUs.
You will also notice that the network is not in use and that the memory, 8G, is little used.

Any suggestions as to what could be going on would be appreciated!!!
Thank you!

Tom

Tom Bell

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Feb 13, 2012, 2:36:30 AM2/13/12
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On 02/13/2012 01:02 AM, Nils Kassube wrote:
> Tom Bell wrote:
>> Most of the time when I start a program, Thunderbird, Firefox,
>> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
>> then there is no guarantee that it will actually start.
> It could be a failing harddisk. Have a look at "/var/log/syslog" if
> there is any hint. Or it could be a network share which is not
> reachable, but I think that in this case the application should finally
> start. Again, there should be a hint in "/var/log/syslog".
>
>
> Nils
>
This is the log:

Feb 12 08:04:32 kubuntu rsyslogd: [origin software="rsyslogd"
swVersion="5.8.1" x-pid="998" x-info="http://www.rsyslog.com"] rsyslogd
was HUPed
Feb 12 08:04:33 kubuntu anacron[10896]: Job `cron.daily' terminated
Feb 12 08:04:33 kubuntu anacron[10896]: Normal exit (1 job run)
Feb 12 08:17:01 kubuntu CRON[11280]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 09:17:01 kubuntu CRON[11310]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 10:17:01 kubuntu CRON[11341]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 11:17:01 kubuntu CRON[11372]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 12:17:01 kubuntu CRON[11403]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 13:17:01 kubuntu CRON[11433]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 14:17:01 kubuntu CRON[11463]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 15:17:01 kubuntu CRON[11495]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 16:17:01 kubuntu CRON[11975]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 16:55:57 kubuntu dhclient: DHCPREQUEST of 192.168.1.100 on eth0
to 192.168.1.1 port 67
Feb 12 16:55:57 kubuntu dhclient: DHCPACK of 192.168.1.100 from 192.168.1.1
Feb 12 16:55:57 kubuntu dhclient: bound to 192.168.1.100 -- renewal in
33581 seconds.
Feb 12 17:17:01 kubuntu CRON[12275]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 18:17:01 kubuntu CRON[12450]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 19:05:42 kubuntu dbus[1002]: [system] Activating service
name='org.kubuntu.qaptworker' (using servicehelper)
Feb 12 19:05:42 kubuntu dbus[1002]: [system] Successfully activated
service 'org.kubuntu.qaptworker'
Feb 12 19:13:45 kubuntu dbus[1002]: [system] Activating service
name='org.kubuntu.qaptworker' (using servicehelper)
Feb 12 19:13:45 kubuntu dbus[1002]: [system] Successfully activated
service 'org.kubuntu.qaptworker'
Feb 12 19:17:01 kubuntu CRON[12728]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 20:17:01 kubuntu CRON[12912]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 21:17:01 kubuntu CRON[13399]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 22:17:17 kubuntu CRON[14408]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 12 23:17:01 kubuntu CRON[15462]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 13 00:17:01 kubuntu CRON[15833]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 13 01:17:01 kubuntu CRON[15866]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
Feb 13 02:15:38 kubuntu dhclient: DHCPREQUEST of 192.168.1.100 on eth0
to 192.168.1.1 port 67
Feb 13 02:15:38 kubuntu dhclient: DHCPACK of 192.168.1.100 from 192.168.1.1
Feb 13 02:15:43 kubuntu dhclient: bound to 192.168.1.100 -- renewal in
37190 seconds.
Feb 13 02:17:01 kubuntu CRON[15958]: (root) CMD ( cd / && run-parts
--report /etc/cron.hourly)
/var/log/syslog (END)

I see nothing of significance in it.
Do you?
Thank you!

Tom

Nils Kassube

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Feb 13, 2012, 3:15:12 AM2/13/12
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Tom Bell wrote:
> On 02/13/2012 01:02 AM, Nils Kassube wrote:
> > Tom Bell wrote:
> >> Most of the time when I start a program, Thunderbird, Firefox,
> >> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
> >> then there is no guarantee that it will actually start.
> >
> > It could be a failing harddisk. Have a look at "/var/log/syslog" if
> > there is any hint. Or it could be a network share which is not
> > reachable, but I think that in this case the application should
> > finally start. Again, there should be a hint in "/var/log/syslog".
>
> This is the log:
[...]

> I see nothing of significance in it.
> Do you?

No, I don't see anything either - it seems like I guessed wrong ...

On the screenshots you mentioned in the other mail, it looks quite
strange: While both CPUs are at 100% at the CPU history display, there
is no process of high CPU usage at the output of the "top" command. But
I have no idea what that means.


Nils

Mark Fraser

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Feb 13, 2012, 4:01:48 AM2/13/12
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On Monday 13 Feb 2012 04:49:43 Tom Bell wrote:

> Most of the time when I start a program, Thunderbird, Firefox, Dolphin,

> etc., it will delay anywhere from 2 to 5 minutes and even then there is

> no guarantee that it will actually start. I have 3 screen captures that

> illustrate the problem and I will upload them to anyone who is interested.

> Below is as much information as I could think to send. If anyone wants

> more information, please be specific.

 

Do you have any effects running?

 

--

Registered Linux User #466407 http://counter.li.org

Basil Chupin

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Feb 13, 2012, 5:22:14 AM2/13/12
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You seem to have quite a number of processes set to NI of (-)20. Why?

(Unless I have misunderstood something I read, a (-) setting gives a
higher priority to a process than a positive value - even if the process
is idle - but, as I said, I may be wrong.)

BC

--
Aspire to inspire before you expire.

Alvin

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Feb 13, 2012, 5:38:37 AM2/13/12
to Kubuntu user technical support
On Mon, 13 Feb 2012 08:33:04 +0100, Tom Bell <cbe...@cfl.rr.com> wrote:
> [...]

> Thanks for the help!
> The files have been uploaded:
>
> http://www.picpaste.com/snapshot3-SMzt9oc1.png
> http://www.picpaste.com/snapshot4-NvZOGk5m.png
> http://www.picpaste.com/snapshot5-0oDMMFaI.png
> <http://www.picpaste.com/snapshot5-0oDMMFaI.png>
> One thing to note: these screenshots are completely unretouched, no
> Photoshop!
> You will note the max out of both the CPUs while "top" shows little
> simultaneous usage of the CPUs.
> You will also notice that the network is not in use and that the memory,
> 8G, is little used.

I see 'md' in that process list. Are you using LVM with snapshots?

Waleed Hamra

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Feb 13, 2012, 10:48:22 AM2/13/12
to Kubuntu user technical support
On 13/02/12 10:15, Nils Kassube wrote:
> Tom Bell wrote:
>> On 02/13/2012 01:02 AM, Nils Kassube wrote:
>>> Tom Bell wrote:
>>>> Most of the time when I start a program, Thunderbird, Firefox,
>>>> Dolphin, etc., it will delay anywhere from 2 to 5 minutes and even
>>>> then there is no guarantee that it will actually start.
>>>
>>> It could be a failing harddisk. Have a look at "/var/log/syslog" if
>>> there is any hint. Or it could be a network share which is not
>>> reachable, but I think that in this case the application should
>>> finally start. Again, there should be a hint in "/var/log/syslog".
>>
>> This is the log:
> [...]
>> I see nothing of significance in it.
>> Do you?
>
> No, I don't see anything either - it seems like I guessed wrong ...
>
> On the screenshots you mentioned in the other mail, it looks quite
> strange: While both CPUs are at 100% at the CPU history display, there
> is no process of high CPU usage at the output of the "top" command. But
> I have no idea what that means.
>
>
> Nils
>

your guess is somewhat correct, but i'm not sure how to verify it. it
doesn't have to be a failing hard drive, but it DOES indicate a huge
interrupts spike, that is usually caused by I/O problems, which almost
always are the result of a hard drive issue.

on my work computer here, i have a very slow PATA hard drive, add the
fact that i'm using full disk encryption, IO becomes a huge bottleneck,
with very similar symptoms as with OP, yet, not that bad. CPU at 100% in
system monitor, but not in top or htop, hard drive crackling maddly
inside the case, as firefox is going through few dozen megabytes of
profile data. it takes firefox some 30 seconds to show any window, then
another 20 seconds to become responsive and usable.

but now to find why is the OP having this....

are you using encryption? if yes, where? root partition? home partition?
full disk? dm-crypt? ecryptfs?

what is your hard drive? size, make, model?

close firefox, open a terminal, make sure you have the package "procps"
installed, if not install it. then, in a terminal, type this:

vmstat -S M 2

once you see one or 2 lines of output, keep it running and start
firefox. keep vmstat running until firefox is up and running, then kill
vmstat with CTRL-C, and copy all its output for us... it'll be helpful
to check the bottlenecks.

--
Waleed K. Hamra
Manager of Hamra Information Systems
Lead Technician at Illusion Computers Megastore

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Tom Bell

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Feb 13, 2012, 11:51:41 AM2/13/12
to kubunt...@lists.ubuntu.com
I did an upgrade from 11.04 to 11.10 and had this problem, so I did an
install which reused
my, at the time current, setup without change.
That got me the same results so I eventually did a complete reinstall
and the (-) settings are what
resulted from that. The last reinstall reformatted the drive.

Tom

Tom Bell

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Feb 13, 2012, 11:54:06 AM2/13/12
to kubunt...@lists.ubuntu.com
On 02/13/2012 05:38 AM, Alvin wrote:
> On Mon, 13 Feb 2012 08:33:04 +0100, Tom Bell <cbe...@cfl.rr.com> wrote:
>> [...]
>> Thanks for the help!
>> The files have been uploaded:
>>
>> http://www.picpaste.com/snapshot3-SMzt9oc1.png
>> http://www.picpaste.com/snapshot4-NvZOGk5m.png
>> http://www.picpaste.com/snapshot5-0oDMMFaI.png
>> <http://www.picpaste.com/snapshot5-0oDMMFaI.png>
>> One thing to note: these screenshots are completely unretouched, no
>> Photoshop!
>> You will note the max out of both the CPUs while "top" shows little
>> simultaneous usage of the CPUs.
>> You will also notice that the network is not in use and that the
>> memory, 8G, is little used.
>
> I see 'md' in that process list. Are you using LVM with snapshots?
>
I am not an expert, so I have no idea what LVM is.
Explanation?
Thank you!

Tom

Alvin

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Feb 13, 2012, 12:04:35 PM2/13/12
to Kubuntu user technical support
On Mon, 13 Feb 2012 17:54:06 +0100, Tom Bell <cbe...@cfl.rr.com> wrote:

> On 02/13/2012 05:38 AM, Alvin wrote:

>> [...]


>> I see 'md' in that process list. Are you using LVM with snapshots?
>>
> I am not an expert, so I have no idea what LVM is.
> Explanation?

Linux Volume Manager. Often used on top of an md device. If you don't know
what it is, you will probably not use it. It can't be installed with the
default Kubuntu installer. You need the alternate CD.

High load when LVM snapshots are present is a known problem.

Unexplained load is often due to I/O problems. Try 'iotop' to see what's
causing I/O.

Tom Bell

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Feb 13, 2012, 4:00:01 PM2/13/12
to Kubuntu user technical support
On 02/13/2012 12:04 PM, Alvin wrote:
> On Mon, 13 Feb 2012 17:54:06 +0100, Tom Bell <cbe...@cfl.rr.com> wrote:
>
>> On 02/13/2012 05:38 AM, Alvin wrote:
>>> [...]
>>> I see 'md' in that process list. Are you using LVM with snapshots?
>>>
>> I am not an expert, so I have no idea what LVM is.
>> Explanation?
>
> Linux Volume Manager. Often used on top of an md device. If you don't
> know what it is, you will probably not use it. It can't be installed
> with the default Kubuntu installer. You need the alternate CD.
>
> High load when LVM snapshots are present is a known problem.
>
> Unexplained load is often due to I/O problems. Try 'iotop' to see
> what's causing I/O.
>
This may be helping, thank you.
I tried iotop and it showed "jdb2/sda1-8" as topping out the cpu cycles.
Checking on the internet eventually lead me to anacron.
Now I am checking further to see what value that is and why it is working.
I did not start it or anything like it.
Supposedly it can be scheduled to run daily, not hourly, minutely or
secondly(sic).
I found where it is connected somehow to firefox in the Window Title
part of System Monitor.

/etc/cron.d/anacron:
# /etc/cron.d/anacron: crontab entries for the anacron package

SHELL=/bin/sh
PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin

#30 7 * * * root test -x /etc/init.d/anacron &&
/usr/sbin/invoke-rc.d anacron start >/dev/null
30 7 * * * root start -q anacron || :


At www.geekstuff.com it says:
/* Begin quote */
Anacron is the cron for desktops and laptops.

Anacron does not expect the system to be running 24 x 7 like a server.

When you want a background job to be executed automatically on a machine
that is not running 24 x 7, you should use anacron.

For example, if you have a backup script scheduled everyday at 11 PM as
a regular cron job, and if your laptop is not up at 11 PM, your backup
job will not be executed.

However, if you have the same job scheduled in anacron, you can be sure
that it will be executed once the laptop come back up.
/* End of quote */

I run my desktop computer 24/7.
I am considering removing anacron, so, has anyone a good argument why not?


Tom

Tom Bell

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Feb 13, 2012, 4:34:36 PM2/13/12
to kubunt...@lists.ubuntu.com
On 02/13/2012 04:00 PM, Tom Bell wrote:
> On 02/13/2012 12:04 PM, Alvin wrote:
>> On Mon, 13 Feb 2012 17:54:06 +0100, Tom Bell <cbe...@cfl.rr.com> wrote:
>>
>>> On 02/13/2012 05:38 AM, Alvin wrote:
>>>> [...] Tom
>
/* snip */
I am considering reformatting to ext3 from ext4 to see if that makes the
difference.
Suggestions? Opinions?
Thank you!

Lindsay Mathieson

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Feb 13, 2012, 6:19:24 PM2/13/12
to Kubuntu user technical support
On Mon, 13 Feb 2012 04:34:36 PM Tom Bell wrote:
> I am considering reformatting to ext3 from ext4 to see if that makes the
> difference.

I doubt it would make any difference, but a good idea in general. ext4 is more
robust than ext3.
--
Lindsay

Basil Chupin

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Feb 13, 2012, 6:54:34 PM2/13/12
to kubunt...@lists.ubuntu.com
On 14/02/12 08:34, Tom Bell wrote:
> On 02/13/2012 04:00 PM, Tom Bell wrote:
>> On 02/13/2012 12:04 PM, Alvin wrote:
>>> On Mon, 13 Feb 2012 17:54:06 +0100, Tom Bell <cbe...@cfl.rr.com>
>>> wrote:
>>>
>>>> On 02/13/2012 05:38 AM, Alvin wrote:
>>>>> [...] Tom
>>
> /* snip */
> I am considering reformatting to ext3 from ext4 to see if that makes
> the difference.
> Suggestions? Opinions?
> Thank you!

ext4 is more solid than ext3. Stay with ext4 - it's not your problem.

I go back t what I said before: what are those processes which have a
(-)20 NI?

Each one has a PID so you can go and see what exactly that process is
all about.

In a console/terminal, as root (ie sudo ......) type 'ps aux' which will
list all your running processes owned by everyone on the system.

Get the PID from the lists you produced which are on picpaste then find
them on this list of ps aux and see what they are.

BC

--
Aspire to inspire before you expire.

--

Lindsay Mathieson

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Feb 13, 2012, 7:54:24 PM2/13/12
to Kubuntu user technical support
On Tue, 14 Feb 2012 09:19:24 AM you wrote:
> On Mon, 13 Feb 2012 04:34:36 PM Tom Bell wrote:
> > I am considering reformatting to ext3 from ext4 to see if that makes the
> > difference.
>
> I doubt it would make any difference, but a good idea in general. ext4 is
> more robust than ext3.

Oops - I thought you meant from ext3 to ext4.

Yeah no, stick with ext4.

Basil Chupin

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Feb 13, 2012, 11:02:42 PM2/13/12
to kubunt...@lists.ubuntu.com
On 14/02/12 10:54, Basil Chupin wrote:
> On 14/02/12 08:34, Tom Bell wrote:
>> On 02/13/2012 04:00 PM, Tom Bell wrote:
>>> On 02/13/2012 12:04 PM, Alvin wrote:
>>>> On Mon, 13 Feb 2012 17:54:06 +0100, Tom Bell <cbe...@cfl.rr.com>
>>>> wrote:
>>>>
>>>>> On 02/13/2012 05:38 AM, Alvin wrote:
>>>>>> [...] Tom
>>>
>> /* snip */
>> I am considering reformatting to ext3 from ext4 to see if that makes
>> the difference.
>> Suggestions? Opinions?
>> Thank you!
>
> ext4 is more solid than ext3. Stay with ext4 - it's not your problem.
>
> I go back t what I said before: what are those processes which have a
> (-)20 NI?
>
> Each one has a PID so you can go and see what exactly that process is
> all about.
>
> In a console/terminal, as root (ie sudo ......) type 'ps aux' which
> will list all your running processes owned by everyone on the system.
>
> Get the PID from the lists you produced which are on picpaste then
> find them on this list of ps aux and see what they are.
>
> BC

Ummm, a slight correction here :-) .

You will need to regenerate the list(s) on picpaste to see the latest
PID numbers for your currently running system - then use ps aux and see

Tom Bell

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Feb 14, 2012, 1:03:50 AM2/14/12
to kubunt...@lists.ubuntu.com
On 02/13/2012 11:02 PM, Basil Chupin wrote:
> /* snip */

>> ext4 is more solid than ext3. Stay with ext4 - it's not your problem.
>>
>> I go back t what I said before: what are those processes which have a
>> (-)20 NI?
>>
>> Each one has a PID so you can go and see what exactly that process is
>> all about.
>>
>> In a console/terminal, as root (ie sudo ......) type 'ps aux' which
>> will list all your running processes owned by everyone on the system.
>>
>> Get the PID from the lists you produced which are on picpaste then
>> find them on this list of ps aux and see what they are.
>>
>> BC
>
>
> Ummm, a slight correction here :-) .
>
> You will need to regenerate the list(s) on picpaste to see the latest
> PID numbers for your currently running system - then use ps aux and
> see what they are.
>
> BC
>
I see.
I did try iotop and did not see a whole lot, but, after looking at the
options for iotop,
I tried "iotop -oa" and got a different picture. See pictures below.

http://www.picpaste.com/iotop5-44HwJVlX.png
http://www.picpaste.com/iotop6-vdP5qXlK.png
http://www.picpaste.com/iotop7-QrgqY92J.png

These photos show firefox and jdb2/sda1-8 hogging the cpus big time.
It is not just firefox, although firefox was in this particular example.
Just about all the programs I have run have suffered the same problem.
And it is quite often intermittent.
Thank you!

Tom

Basil Chupin

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Feb 14, 2012, 1:43:08 AM2/14/12
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Something totally not right here.....

To begin, how can you have 2 copies of Firefox running by "tommy"?

From my experience, Firefox will not run for a user if it is already
running for that user - in this case "tommy".

A question: if you had already mentioned it I have forgotten already :-(
but which version of Kubuntu are you running, which version of KDE, and
which version of Firefox?

And what is that PID, called jdb2/sda1-8, which is taking up most of the
cpu? It is owned by root. So what is root doing with this jdb2-thingie?

BC

--
Aspire to inspire before you expire.

Alvin

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Feb 14, 2012, 4:06:48 AM2/14/12
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On 14/02/2012 7:43, Basil Chupin wrote:
> On 14/02/12 17:03, Tom Bell wrote:
> [...]

>
> And what is that PID, called jdb2/sda1-8, which is taking up most of the
> cpu? It is owned by root. So what is root doing with this jdb2-thingie?

According to Wikipedia, jdb2 is a "generic block device journaling
layer". I suspect it's pretty normal to see a lot of 'jdb2' if there is
a lot of disk I/O. High disk I/O explains speed issues pretty well. It's
also why I asked about LVM with snapshots (and why I switched to FreeBSD
with ZFS when I need snapshots.)

Tom, can you post the output of 'mount'?

_Links_
http://en.wikipedia.org/wiki/Journaling_block_device
http://www.freebsd.org/doc/en/books/arch-handbook/driverbasics-block.html

Tom Bell

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Feb 14, 2012, 5:13:42 AM2/14/12
to kubunt...@lists.ubuntu.com
On 02/14/2012 04:06 AM, Alvin wrote:
> On 14/02/2012 7:43, Basil Chupin wrote:
>> On 14/02/12 17:03, Tom Bell wrote:
>> [...]
>>
>> And what is that PID, called jdb2/sda1-8, which is taking up most of the
>> cpu? It is owned by root. So what is root doing with this jdb2-thingie?
> According to Wikipedia, jdb2 is a "generic block device journaling
> layer". I suspect it's pretty normal to see a lot of 'jdb2' if there is
> a lot of disk I/O. High disk I/O explains speed issues pretty well. It's
> also why I asked about LVM with snapshots (and why I switched to FreeBSD
> with ZFS when I need snapshots.)
>
> Tom, can you post the output of 'mount'?
>
> _Links_
> http://en.wikipedia.org/wiki/Journaling_block_device
> http://www.freebsd.org/doc/en/books/arch-handbook/driverbasics-block.html
>
mount
/dev/sda1 on / type ext4 (rw,errors=remount-ro,commit=0)
proc on /proc type proc (rw,noexec,nosuid,nodev)
sysfs on /sys type sysfs (rw,noexec,nosuid,nodev)
fusectl on /sys/fs/fuse/connections type fusectl (rw)
none on /sys/kernel/debug type debugfs (rw)
none on /sys/kernel/security type securityfs (rw)
udev on /dev type devtmpfs (rw,mode=0755)
devpts on /dev/pts type devpts (rw,noexec,nosuid,gid=5,mode=0620)
tmpfs on /run type tmpfs (rw,noexec,nosuid,size=10%,mode=0755)
none on /run/lock type tmpfs (rw,noexec,nosuid,nodev,size=5242880)
none on /run/shm type tmpfs (rw,nosuid,nodev)
binfmt_misc on /proc/sys/fs/binfmt_misc type binfmt_misc
(rw,noexec,nosuid,nodev)
/dev/sdb1 on /media/My Book type vfat
(rw,nosuid,nodev,uid=1000,gid=1000,shortname=mixed,dmask=0077,utf8=1,showexec,uhelper=udisks)

Done.
Thank you!

Tom

Tom Bell

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Feb 14, 2012, 5:27:07 AM2/14/12
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I was a little stunned to see those start up when I clicked once on
FIREFOX!!!

> A question: if you had already mentioned it I have forgotten already
> :-( but which version of Kubuntu are you running, which version of
> KDE, and which version of Firefox?
>
Here is more than you asked for:
DISTRO info

Distributor ID: Ubuntu
Description: Ubuntu 11.10
Release: 11.10
Codename: oneiric

FILESYSTEM info
Filesystem Type Size Used Avail Use% Mounted on
/dev/sda1 ext4 681G 13G 634G 2% /
udev devtmpfs 3.7G 4.0K 3.7G 1% /dev
tmpfs tmpfs 1.5G 956K 1.5G 1% /run
none tmpfs 5.0M 0 5.0M 0% /run/lock
none tmpfs 3.7G 1.5M 3.7G 1% /run/shm
/dev/sdb1 vfat 932G 729G 203G 79% /media/My Book

LINUX info
Linux kubuntu 3.0.0-16-generic #28-Ubuntu SMP Fri Jan 27 17:44:39 UTC

2012 x86_64 x86_64 x86_64 GNU/Linux

CPU hardware info
26: *-cpu
27- description: CPU
28- product: AMD Athlon(tm) 64 X2 Dual Core Processor 6400+
29- vendor: Hynix Semiconductor (Hyundai Electronics)
30- physical id: 1
31: bus info: cpu@0
32- version: AMD Athlon(tm) 64 X2 Dual Core Processor 6400+
33- slot: Socket AM2
34- size: 3200MHz
35- capacity: 3700MHz
36- width: 64 bits
37- clock: 200MHz
38- capabilities: fpu fpu_exception wp vme de pse tsc msr pae

mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2
ht syscall nx mmxext fxsr_opt rdtscp x86-64 3dnowext 3dnow rep_good nopl
extd_apicid pni cx16 lahf_lm cmp_legacy svm extapic cr8_legacy

VIDEO
194: description: VGA compatible controller
195- product: G92 [GeForce 9800 GT]

WIRELESS, MODEM, HD, WEBCAM
5:Bus 001 Device 006: ID 0bda:8187 Realtek Semiconductor Corp. RTL8187
Wireless Adapter
6-Bus 001 Device 007: ID 047e:2892 Agere Systems, Inc. (Lucent) Systems
Soft Modem
12:Bus 001 Device 011: ID 1058:1102 Western Digital Technologies, Inc.
13-Bus 001 Device 012: ID 046d:0809 Logitech, Inc. Webcam Pro 9000

WIRELESS and ETHERNET
eth0 Link encap:Ethernet HWaddr /* snip */
inet addr:192.168.1.100 Bcast:192.168.1.255 Mask:255.255.255.0
inet6 addr: /* snip */ Scope:Link
UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
RX packets:537 errors:0 dropped:0 overruns:0 frame:0
TX packets:456 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:234420 (234.4 KB) TX bytes:247018 (247.0 KB)
Interrupt:42 Base address:0x4000

eth1 Link encap:Ethernet HWaddr /* snip */
UP BROADCAST MULTICAST MTU:1500 Metric:1
RX packets:0 errors:0 dropped:0 overruns:0 frame:0
TX packets:0 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:0 (0.0 B) TX bytes:0 (0.0 B)
Interrupt:43

lo Link encap:Local Loopback
inet addr:127.0.0.1 Mask:255.0.0.0
inet6 addr: ::1/128 Scope:Host
UP LOOPBACK RUNNING MTU:16436 Metric:1
RX packets:68 errors:0 dropped:0 overruns:0 frame:0
TX packets:68 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:0
RX bytes:4840 (4.8 KB) TX bytes:4840 (4.8 KB)

wlan0 Link encap:Ethernet HWaddr /* snip */
UP BROADCAST MULTICAST MTU:1500 Metric:1
RX packets:0 errors:0 dropped:0 overruns:0 frame:0
TX packets:0 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:0 (0.0 B) TX bytes:0 (0.0 B)

RESULTS of MOUNT command:


mount
/dev/sda1 on / type ext4 (rw,errors=remount-ro,commit=0)
proc on /proc type proc (rw,noexec,nosuid,nodev)
sysfs on /sys type sysfs (rw,noexec,nosuid,nodev)
fusectl on /sys/fs/fuse/connections type fusectl (rw)
none on /sys/kernel/debug type debugfs (rw)
none on /sys/kernel/security type securityfs (rw)
udev on /dev type devtmpfs (rw,mode=0755)
devpts on /dev/pts type devpts (rw,noexec,nosuid,gid=5,mode=0620)
tmpfs on /run type tmpfs (rw,noexec,nosuid,size=10%,mode=0755)
none on /run/lock type tmpfs (rw,noexec,nosuid,nodev,size=5242880)
none on /run/shm type tmpfs (rw,nosuid,nodev)
binfmt_misc on /proc/sys/fs/binfmt_misc type binfmt_misc
(rw,noexec,nosuid,nodev)
/dev/sdb1 on /media/My Book type vfat
(rw,nosuid,nodev,uid=1000,gid=1000,shortname=mixed,dmask=0077,utf8=1,showexec,uhelper=udisks)

> And what is that PID, called jdb2/sda1-8, which is taking up most of
> the cpu? It is owned by root. So what is root doing with this
> jdb2-thingie?
>
> BC
>

See Alvin's following response. I already looked it up myself and it
seems to be something to do
with JFS (Journaling File System), in this case ext4, which you will see
in the equipment list above.
It has me pretty well stumped.
The fact that multiple FIREFOXes ran is also confusing, but shows when
using the 'iotop -oa' command.
I had to run iotop with sudo, just to let you know.
Please keep in mind that this problem is not just with FIREFOX, but just
about every program
that I attempt to run and it happens at different times.
Sometimes I can start a program right away, but have slow downs later on.
Sometimes I click on the program and it never starts
Sometimes I can click on a program, then click on the konsole to open
and the konsole
opens before the program, but it may take awhile to start, or, it could
start right away.
Meanwhile the first program may or may not even show up and sometimes
not for 5-10 minutes.

This problem is v-e-r-y frustrating!!!!!!
Thank you!

Tom

Tom Bell

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Feb 16, 2012, 10:22:53 PM2/16/12
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Today, I replaced the old HD with a new one and everything is back to
normal. The only thing I can figure is that the electronics of the SATA
IDE drive went West(went bad).
The SATA buss is only a buss so I figured that either it was my M/B or
the IDE part of the drive that was defective, so replacing the drive
settled the matter.
Thanks for all your help! Keep this in mind when someone else has a
similar problem!

Tom

Bruce Bales

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Feb 18, 2012, 4:00:04 PM2/18/12
to Kubuntu user technical support
I installed Kubuntu 10.04-3. How do I learn what version of KDE I
have? Seems logical
that the numbers are stored somewhere in a file. Would the 10.04-3
numbers be somewhere
in a file?

Is it possible to downgrade to another earlier version of KDE? If so,
Where could I find
instructions for how to do it?
bruce

Leslie Anne Chatterton

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Feb 18, 2012, 4:31:07 PM2/18/12
to Kubuntu user technical support

Hi Bruce,

Kubuntu comes out twice a year and what you have is the April 2010 version. It is the most recent long term support version; the next one is 12.04, coming out in April 2012. The "-3" part means it incorporates some security and bug fixes, but I'm not sure what the date code for that is. Each version also has an animal name, but I find them hard to keep track of! The past (April 2011) was Natty Narwhal, current one (October 2011) is Oneiric Ocelot, with Precise Pangolin coming in April 2012.

It would not be a good idea to go to an earlier version (less secure, more bugs), but if you get your hands on a disk from a prior one you can certainly install it. You'll almost certainly lose all your work and have to start over with a clean slate.

If you want to know your version type "cat /etc/issue" or "uname -a" at a command prompt (terminal).

Sent from my Motorola Xoom Android tablet
On Feb 18, 2012 4:01 PM, "Bruce Bales" <bba...@cox.net> wrote:

Nils Kassube

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Feb 18, 2012, 4:34:09 PM2/18/12
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Bruce Bales wrote:
> I installed Kubuntu 10.04-3. How do I learn what version of KDE I
> have? Seems logical
> that the numbers are stored somewhere in a file. Would the 10.04-3
> numbers be somewhere
> in a file?

If you mean the Kubuntu version, it is in the file "/etc/issue". If you
regularly run updates, it should now be version 10.04.4. OTOH, if you
actually mean the KDE version, there is an option in the help menu of
all KDE applications.

> Is it possible to downgrade to another earlier version of KDE?

No, not really. You could only install a previous Kubuntu version.
However those versions prior to 10.04 are no longer supported.


Nils

Ryan Gauger

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Feb 18, 2012, 4:52:14 PM2/18/12
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On 02/18/2012 03:34 PM, Nils Kassube wrote:
> Bruce Bales wrote:
>> I installed Kubuntu 10.04-3. How do I learn what version of KDE I
>> have? Seems logical
>> that the numbers are stored somewhere in a file. Would the 10.04-3
>> numbers be somewhere
>> in a file?
> If you mean the Kubuntu version, it is in the file "/etc/issue". If you
> regularly run updates, it should now be version 10.04.4. OTOH, if you
> actually mean the KDE version, there is an option in the help menu of
> all KDE applications.
>
>> Is it possible to downgrade to another earlier version of KDE?
> No, not really. You could only install a previous Kubuntu version.
> However those versions prior to 10.04 are no longer supported.
>
>
> Nils
>
If you simply want the information without having to find a file, simply
open up a KDE application, go to Help on the toolbar, then "About KDE".
This should give you the correct KDE version towards the top-left of the
window.

José Queiroz

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Feb 18, 2012, 9:15:13 PM2/18/12
to Kubuntu user technical support


2012/2/18 Bruce Bales <bba...@cox.net>

I installed Kubuntu 10.04-3.  How do I learn what version of KDE I have?  Seems logical
that the numbers are stored somewhere in a file.  Would the 10.04-3 numbers be somewhere
in a file?

Is it possible to downgrade to another earlier version of KDE?  If so, Where could I find
instructions for how to do it?
bruce

It's not recommended to downgrade KDE. If you doesn't like KDE4 look&feel, you may try some of the KDE themes, Gnome, or even Unity.

I recommend you to do exactly the opposite: instead of downgrading, upgrade it. Open up Software Properties and enable "Security" and "Update" Repositories. Doing so, you'll get both security and bug fixes past 10.04-3. If you're brave of heart :D, you can enable also Backports Repository, and get several new packages not included with Kubuntu Lucid, but made available to Natty and/or Oneiric, the following versions.

But if you really have the guts :D :D, install Kubuntu PPA: https://launchpad.net/~kubuntu-ppa/+archive/backports
These will give you the new versions of KDE. I use them on most of my Kubuntu machines.

Answering one of your questions: which version ships with Kubuntu 10.04 Lucid Lynx? Lucid ships with KDE 4.2. You can check it with "apt-cache policy kdebase-runtime". You can also open any KDE app (e.g. konsole), and go Help >> About KDE.

Bruce Bales

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Feb 19, 2012, 4:52:01 PM2/19/12
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Thanks to all of you.  I got some good answers and may get things going again.
bruce
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