Output files

[ajm...@gmail.com]

Hi, 

I'm using KneadData to remove human reads from my pair end sequence samples. In the output, I got a total 9 files. Besides .log, _paired1/2, trimmed 1/2, ummatched1/2, I also got a set of .trimmed.single.1/2.fastq files. Does any one know what's the difference between trimmed and trimmed single?

Thanks. 

AJ

[Lauren McIver]

Hi AJ - The "trimmed" 1/2 files are the pairs that remain after trimming while the files with "single" and "trimmed" in the name are the orphans after trimming.

Thanks!

Lauren

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[ajm...@gmail.com]

I see. Thank you so much, Lauren. 

AJ