Error with opening kwik-gui

Jian Carlo Nocon

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Oct 4, 2019, 5:50:54 PM10/4/19

to KlustaViewas

Hi, I just downloaded klusta and am trying to get through the tutorial instructions, but I get an error when I try to use kwik-gui:

(klusta) dhcp-wifi-8021x-155-41-61-48:klustakwik jionocon$ phy kwik-gui hybrid_10sec.kwik

Usage: phy [OPTIONS] COMMAND [ARGS]...

Error: No such command "kwik-gui".

For reference, here is the output when I enter "conda list":

# packages in environment at //miniconda2/envs/klusta:

#

# Name Version Build Channel

appnope 0.1.0 py37_0

atomicwrites 1.3.0 pypi_0 pypi

attrs 19.2.0 pypi_0 pypi

backcall 0.1.0 py37_0

blas 1.0 mkl

ca-certificates 2019.8.28 0

certifi 2019.9.11 py37_0

chardet 3.0.4 pypi_0 pypi

click 7.0 pypi_0 pypi

cycler 0.10.0 py37_0

cython 0.29.13 py37h0a44026_0

dataio 0.0.5 pypi_0 pypi

dbus 1.13.6 h90a0687_0

decorator 4.4.0 py37_1

expat 2.2.6 h0a44026_0

freetype 2.9.1 hb4e5f40_0

freetype-py 2.1.0.post1 pypi_0 pypi

gettext 0.19.8.1 h15daf44_3

glib 2.56.2 hd9629dc_0

h5py 2.9.0 py37h3134771_0

hdf5 1.10.4 hfa1e0ec_0

icu 58.2 h4b95b61_1

idna 2.8 pypi_0 pypi

importlib-metadata 0.23 pypi_0 pypi

intel-openmp 2019.4 233

ipython 7.8.0 py37h39e3cac_0

ipython_genutils 0.2.0 py37_0

jedi 0.15.1 py37_0

joblib 0.14.0 pypi_0 pypi

jpeg 9b he5867d9_2

kiwisolver 1.1.0 py37h0a44026_0

klusta 3.0.16 pypi_0 pypi

klustakwik2 0.2.6 pypi_0 pypi

klustaviewa 0.4.7 pypi_0 pypi

kwiklib 0.3.7 pypi_0 pypi

libcxx 4.0.1 hcfea43d_1

libcxxabi 4.0.1 hcfea43d_1

libedit 3.1.20181209 hb402a30_0

libffi 3.2.1 h475c297_4

libgfortran 3.0.1 h93005f0_2

libiconv 1.15 hdd342a3_7

libpng 1.6.37 ha441bb4_0

matplotlib 3.1.1 py37h54f8f79_0

mkl 2019.4 233

mkl-service 2.3.0 py37hfbe908c_0

mkl_fft 1.0.14 py37h5e564d8_0

mkl_random 1.1.0 py37ha771720_0

more-itertools 7.2.0 pypi_0 pypi

ncurses 6.1 h0a44026_1

numpy 1.17.2 py37h99e6662_0

numpy-base 1.17.2 py37h6575580_0

openssl 1.1.1d h1de35cc_2

packaging 19.2 pypi_0 pypi

parso 0.5.1 py_0

pcre 8.43 h0a44026_0

pexpect 4.7.0 py37_0

phy 1.0.9 pypi_0 pypi

phycontrib 1.0.15 pypi_0 pypi

pickleshare 0.7.5 py37_0

pip 19.2.3 py37_0

pluggy 0.13.0 pypi_0 pypi

prompt_toolkit 2.0.9 py37_0

ptyprocess 0.6.0 py37_0

py 1.8.0 pypi_0 pypi

pygments 2.4.2 py_0

pymongo 3.9.0 pypi_0 pypi

pyopengl 3.1.0 pypi_0 pypi

pyparsing 2.4.2 py_0

pyqt5 5.13.1 pypi_0 pypi

pyqt5-sip 4.19.19 pypi_0 pypi

pytest 5.2.0 pypi_0 pypi

python 3.7.4 h359304d_1

python-dateutil 2.8.0 py37_0

pytz 2019.2 py_0

qt 5.9.7 h468cd18_1

readline 7.0 h1de35cc_5

requests 2.22.0 pypi_0 pypi

responses 0.10.6 pypi_0 pypi

scipy 1.3.1 py37h1410ff5_0

setuptools 41.2.0 py37_0

sip 4.19.8 py37h0a44026_0

six 1.12.0 py37_0

sqlite 3.30.0 ha441bb4_0

tk 8.6.8 ha441bb4_0

tornado 6.0.3 py37h1de35cc_0

tqdm 4.36.1 pypi_0 pypi

traitlets 4.3.3 pypi_0 pypi

urllib3 1.25.6 pypi_0 pypi

utils 0.9.0 pypi_0 pypi

vispy 0.6.1 pypi_0 pypi

wcwidth 0.1.7 py37_0

wheel 0.33.6 py37_0

xz 5.2.4 h1de35cc_4

zipp 0.6.0 pypi_0 pypi

zlib 1.2.11 h1de35cc_3

Looking at past conversations here, it seems that one solution was to uninstall pyqt5 and install pyqt4 since phy was not compatible with the latter. This solution doesn't work for me:

Collecting package metadata (current_repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

Collecting package metadata (repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

- pyqt4

Current channels:

- https://repo.anaconda.com/pkgs/main/osx-64

- https://repo.anaconda.com/pkgs/main/noarch

- https://repo.anaconda.com/pkgs/r/osx-64

- https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're

looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

What other solutions should I try?

Jio Nocon

Ph.D. student, Natural Sounds and Neural Coding Laboratory

Boston University

Cyrille Rossant

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Oct 7, 2019, 8:56:07 AM10/7/19

to Jian Carlo Nocon, KlustaViewas

Hi, could you try to install the development version of phy (see https://phy.readthedocs.io/en/latest/) and see if it works better?

Best,

Cyrille

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Jian Carlo Nocon

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Oct 7, 2019, 1:38:41 PM10/7/19

to KlustaViewas

Alright, I just tried installing the development version of phy and got this:

(phy2) dhcp-wifi-8021x-155-41-101-132:klustakwik jionocon$ phy kwik-gui hybrid_10sec.kwik

Traceback (most recent call last):

File "//miniconda2/envs/phy2/bin/phy", line 11, in <module>

load_entry_point('phy', 'console_scripts', 'phy')()

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/core.py", line 764, in __call__

return self.main(*args, **kwargs)

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/core.py", line 717, in main

rv = self.invoke(ctx)

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/core.py", line 1137, in invoke

return _process_result(sub_ctx.command.invoke(sub_ctx))

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/core.py", line 956, in invoke

return ctx.invoke(self.callback, **ctx.params)

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/core.py", line 555, in invoke

return callback(*args, **kwargs)

File "//miniconda2/envs/phy2/lib/python3.7/site-packages/click/decorators.py", line 17, in new_func

return f(get_current_context(), *args, **kwargs)

File "/Users/jionocon/Desktop/klustakwik/phy/phy/apps/__init__.py", line 181, in cli_kwik_gui

from .kwik.gui import kwik_gui

File "/Users/jionocon/Desktop/klustakwik/phy/phy/apps/kwik/__init__.py", line 11, in <module>

from .gui import KwikController, kwik_describe, kwik_gui # noqa

File "/Users/jionocon/Desktop/klustakwik/phy/phy/apps/kwik/gui.py", line 47, in <module>

class KwikModelGUI(KwikModel):

NameError: name 'KwikModel' is not defined

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Cyrille Rossant

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Oct 8, 2019, 7:45:53 AM10/8/19

to Jian Carlo Nocon, KlustaViewas

Okay, could you do "pip install klusta" and try again?

Cyrille

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Jian Carlo Nocon

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Oct 8, 2019, 10:56:19 AM10/8/19

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Alright, that seemed to work. Thank you so much for your help!

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