Hi Richard.
I'm running MauiTopicExtractor with -d (debug mode) option.
These numbers appear in the console.
thiago@lrm-prometheus:~/min/ingles/Maui1.2$ java maui.main.MauiTopicExtractor -l data/user/test/ -m test -d -v agrovoc_en -f skos
Extracting keyphrases with options: -l data/user/test/ -m test -v agrovoc_en -f skos -e default -i en -n 10 -t maui.stemmers.PorterStemmer -s maui.stopwords.StopwordsEnglish -d
-- Loading the model...
--- Loading the vocabulary...
--- Building the Vocabulary index from the SKOS file...
--- Statistics about the vocabulary:
38201 terms in total
10028 non-descriptive terms
28172 terms have related terms
-- Extracting keyphrases...
No existing topics for data/user/test/a-inter_cropping.txt
-- Reading instance
-- Converting instance for document a-inter_cropping
---- Extracting candidates...
143 candidates
0 positive; 143 negative instances
-- Processing document: a-inter_cropping
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_3910,Intercropping,0.036913,2.396614,0.088466,0,0.933007,0.933007,2,1,0,4,0,0,0,0,0.834921,1,False http://www.fao.org/aos/agrovoc#c_1972,Crops,0.130872,0.229574,0.030045,0.014706,0.978758,0.964052,7,1,0,4,0,0,0,0,0.309532,2,False http://www.fao.org/aos/agrovoc#c_1971,'Cropping systems',0.003356,1.776492,0.005961,0.674837,0.674837,0,6,2,0,8,0,0,0,0,0.222895,3,False
http://www.fao.org/aos/agrovoc#c_207,Agroforestry,0.003356,1.365989,0.004584,0.107843,0.107843,0,13,1,0,2,0,0,0,0,0.210049,4,False http://www.fao.org/aos/agrovoc#c_7038,'Shifting cultivation',0.006711,1.57789,0.01059,0.084967,0.364379,0.279412,3,3,0,2,0,0,0,0,0.203846,5,False
http://www.fao.org/aos/agrovoc#c_34762,'Dairy farms',0.003356,3.291998,0.011047,0.047386,0.047386,0,1,2,0,2,0,0,0,0,0.194903,6,False
http://www.fao.org/aos/agrovoc#c_5319,Oesophagus,0.127517,0.247476,0.031557,0.014706,0.978758,0.964052,7,1,0,0,0,0,0,0,0.189903,7,False http://www.fao.org/aos/agrovoc#c_208,'Agroindustrial sector',0.003356,2.014903,0.006761,0.098039,0.098039,0,9,1,0,1,0,0,0,0,0.184876,8,False
http://www.fao.org/aos/agrovoc#c_6148,'Poultry farming',0.003356,3.193558,0.010717,0.150327,0.150327,0,4,2,0,2,0,0,0,0,0.183461,9,False
http://www.fao.org/aos/agrovoc#c_6507,Reproduction,0.003356,0.869334,0.002917,0.95915,0.95915,0,2,1,0,1,0,0,0,0,0.170569,10,False -- 0.0 correct
No existing topics for data/user/test/w-Virgil.txt
-- Reading instance
-- Converting instance for document w-Virgil
---- Extracting candidates...
214 candidates
0 positive; 214 negative instances
-- Processing document: w-Virgil
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_16144,Pastoralism,0.011472,1.784097,0.020468,0.011111,0.220782,0.209671,2,1,0,0,0,0,0,0,0.116808,1,False http://www.fao.org/aos/agrovoc#c_4253,Legislation,0.003824,0.158004,0.000604,0.038272,0.092387,0.054115,32,1,0,0,0,0,0,0,0.111532,2,False http://www.fao.org/aos/agrovoc#c_529,Apiculture,0.003824,2.67031,0.010212,0.261111,0.272222,0.011111,2,1,0,0,0,0,0,0,0.07084,3,False http://www.fao.org/aos/agrovoc#c_4311,Libraries,0.005736,1.483144,0.008508,0.825926,0.863374,0.037449,3,1,0,0,0,0,0,0,0.058405,4,False http://www.fao.org/aos/agrovoc#c_3041,Forecasting,0.013384,0.084218,0.001127,0.55823,0.949177,0.390947,18,1,0,1,0,0,0,0,0.055217,5,False http://www.fao.org/aos/agrovoc#c_2138,Death,0.01912,1.110218,0.021228,0.048971,0.935597,0.886626,0,1,0,1,0,0,0,0,0.053671,6,False http://www.fao.org/aos/agrovoc#c_916,Biographies,0.015296,4.579852,0.070055,0.059877,0.882305,0.822428,0,1,0,1,0,0,0,0,0.05086,7,False http://www.fao.org/aos/agrovoc#c_192,Aging,0.042065,1.003302,0.042204,0.052263,0.911523,0.859259,0,1,0,1,0,0,0,0,0.05086,8,False http://www.fao.org/aos/agrovoc#c_186,Age,0.00956,0.60251,0.00576,0.00823,0.929424,0.921193,2,1,0,3,0,0,0,0,0.050723,9,False http://www.fao.org/aos/agrovoc#c_8491,Youth,0.003824,1.668861,0.006382,0.123251,0.823868,0.700617,4,1,0,1,0,0,0,0,0.046825,10,False -- 0.0 correct
No existing topics for data/user/test/ab387e.txt
-- Reading instance
-- Converting instance for document ab387e
---- Extracting candidates...
323 candidates
0 positive; 323 negative instances
-- Processing document: ab387e
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_3050,'Forest resources',0.009498,1.178655,0.011195,0.020748,0.987415,0.966667,54,2,0,8,0,0,0,0,0.73422,1,False
http://www.fao.org/aos/agrovoc#c_3218,'Genetic resources',0.017639,1.59039,0.028053,0.00034,0.953401,0.953061,15,2,0,4,0,0,0,0,0.643501,2,False
http://www.fao.org/aos/agrovoc#c_2676,Ethiopia,0.013569,1.261131,0.017112,0.003741,0.99966,0.995918,5,1,0,0,0,0,0,0,0.321761,3,False http://www.fao.org/aos/agrovoc#c_28127,'Protective forests',0.008141,1.791759,0.014587,0.517347,0.803061,0.285714,26,2,0,2,0,0,0,0,0.274102,4,False
http://www.fao.org/aos/agrovoc#c_28075,'Forest protection',0.008141,1.791759,0.014587,0.517347,0.803061,0.285714,26,2,0,3,0,0,0,0,0.249988,5,False
http://www.fao.org/aos/agrovoc#c_3137,Fuelwood,0.006106,0.935709,0.005713,0.286054,0.498299,0.212245,36,1,0,2,0,0,0,0,0.243076,6,False http://www.fao.org/aos/agrovoc#c_33560,Sustainability,0.006106,0.239299,0.001461,0.007823,0.952041,0.944218,50,1,0,2,0,0,0,0,0.24102,7,False http://www.fao.org/aos/agrovoc#c_28126,'Protected forests',0.004071,1.57789,0.006423,0.517347,0.803061,0.285714,14,2,0,3,0,0,0,0,0.218172,8,False
http://www.fao.org/aos/agrovoc#c_8426,'Wood industry',0.006106,2.054124,0.012542,0.282993,0.491837,0.208844,17,2,0,2,0,0,0,0,0.167405,9,False
http://www.fao.org/aos/agrovoc#c_3060,'Forestry policies',0.002714,1.717651,0.004661,0.747619,0.823129,0.07551,45,2,0,3,0,0,0,0,0.163501,10,False
-- 0.0 correct
No existing topics for data/user/test/a-cotton.txt
-- Reading instance
-- Converting instance for document a-cotton
---- Extracting candidates...
684 candidates
0 positive; 684 negative instances
-- Processing document: a-cotton
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_3335,Gossypium,0.118587,1.162126,0.137813,0.000363,0.962148,0.961785,1,1,0,9,0,0,0,0,0.421562,1,False http://www.fao.org/aos/agrovoc#c_1926,Cotton,0.115822,0.809969,0.093812,0.000363,0.962148,0.961785,1,1,0,2,0,0,0,0,0.321562,2,False http://www.fao.org/aos/agrovoc#c_3337,'Gossypium barbadense',0.002458,5.966147,0.014663,0.006772,0.787157,0.780385,0,2,0,1,0,0,0,0,0.269513,3,False
http://www.fao.org/aos/agrovoc#c_3336,'Gossypium arboreum',0.002458,5.049856,0.012411,0.007014,0.587133,0.580119,0,2,0,1,0,0,0,0,0.172739,4,False
http://www.fao.org/aos/agrovoc#c_3339,'Gossypium hirsutum',0.002151,4.261399,0.009164,0.00653,0.786673,0.780143,0,2,0,1,0,0,0,0,0.166992,5,False
http://www.fao.org/aos/agrovoc#c_5739,Pesticides,0.002458,1.01032,0.002483,0.347442,0.672512,0.32507,9,1,0,7,0,0,0,0,0.148177,6,False http://www.fao.org/aos/agrovoc#c_3635,History,0.004301,0.745791,0.003208,0.004958,0.952594,0.947636,2,1,0,1,0,0,0,0,0.121741,7,False http://www.fao.org/aos/agrovoc#c_34005,'Cotton ginning',0.006759,3.225307,0.021799,0.008103,0.823074,0.814972,0,1,0,2,0,0,0,0,0.12021,8,False
http://www.fao.org/aos/agrovoc#c_49822,'Aral Sea',0.000922,4.261399,0.003928,0.339461,0.84073,0.50127,0,2,0,1,0,0,0,0,0.105326,9,False
http://www.fao.org/aos/agrovoc#c_761,'Bacillus thuringiensis',0.000922,4.174387,0.003847,0.347805,0.875317,0.527512,0,2,0,1,0,0,0,0,0.105326,10,False
-- 0.0 correct
No existing topics for data/user/test/a-crop_destruction.txt
-- Reading instance
-- Converting instance for document a-crop_destruction
---- Extracting candidates...
60 candidates
0 positive; 60 negative instances
-- Processing document: a-crop_destruction
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_5319,Oesophagus,0.121495,0.247476,0.030067,0,0.9,0.9,7,1,0,0,0,0,0,0,0.534121,1,False http://www.fao.org/aos/agrovoc#c_1972,Crops,0.121495,0.229574,0.027892,0,0.9,0.9,7,1,0,0,0,0,0,0,0.534121,2,False http://www.fao.org/aos/agrovoc#c_34779,'European Union',0.018692,0.87855,0.016422,0.392857,0.75,0.357143,3,2,0,0,0,0,0,0,0.19344,3,False
http://www.fao.org/aos/agrovoc#c_13570,'Price fixing',0.009346,0.301452,0.002817,0.35,0.35,0,15,1,0,0,0,0,0,0,0.145045,4,False
http://www.fao.org/aos/agrovoc#c_8406,Wines,0.018692,2.228477,0.041654,0.385714,0.4,0.014286,0,1,0,1,0,0,0,0,0.142527,5,False http://www.fao.org/aos/agrovoc#c_9499,Burning,0.037383,0.938982,0.035102,0.235714,0.839286,0.603571,0,1,0,1,0,0,0,0,0.142527,6,False http://www.fao.org/aos/agrovoc#c_28752,'Production quota',0.009346,3.886705,0.036324,0.675,0.675,0,0,2,0,0,0,0,0,0,0.134122,7,False
http://www.fao.org/aos/agrovoc#c_8678,'Agricultural products',0.028037,0.362185,0.010155,0.182143,0.978571,0.796429,6,2,0,1,0,0,0,0,0.114152,8,False
http://www.fao.org/aos/agrovoc#c_16118,'Crop residues',0.009346,1.839012,0.017187,0.289286,0.289286,0,2,2,0,0,0,0,0,0,0.108741,9,False
http://www.fao.org/aos/agrovoc#c_3029,'Food supply',0.009346,0.897243,0.008385,0.542857,0.542857,0,15,2,0,1,0,0,0,0,0.099001,10,False
-- 0.0 correct
No existing topics for data/user/test/w-james_joyce.txt
-- Reading instance
-- Converting instance for document w-james_joyce
---- Extracting candidates...
419 candidates
0 positive; 419 negative instances
-- Processing document: w-james_joyce
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_6173,Pressing,0.020725,0.444686,0.009216,0.462702,0.919015,0.456313,2,1,0,2,0,0,0,0,0.154503,1,False http://www.fao.org/aos/agrovoc#c_7108,Sleep,0.022021,1.791759,0.039456,0.013811,0.957911,0.9441,0,1,0,1,0,0,0,0,0.15086,2,False http://www.fao.org/aos/agrovoc#c_3635,History,0.003886,0.745791,0.002898,0.501033,0.940436,0.439402,2,1,0,1,0,0,0,0,0.105839,3,False http://www.fao.org/aos/agrovoc#c_4311,Libraries,0.007772,1.483144,0.011527,0.063322,0.937805,0.874483,3,1,0,0,0,0,0,0,0.075048,4,False http://www.fao.org/aos/agrovoc#c_5168,Newspapers,0.022021,0.442688,0.009748,0.092916,0.919015,0.826099,2,1,0,1,0,0,0,0,0.064446,5,False http://www.fao.org/aos/agrovoc#c_35747,Presses,0.020725,0.485508,0.010062,0.462702,0.919015,0.456313,2,1,0,2,0,0,0,0,0.058851,6,False http://www.fao.org/aos/agrovoc#c_7050,Siblings,0.013601,1.59039,0.021631,0.043874,0.962044,0.91817,0,1,0,2,0,0,0,0,0.053671,7,False http://www.fao.org/aos/agrovoc#c_916,Biographies,0.006477,4.579852,0.029662,0.032788,0.955938,0.923149,0,1,0,1,0,0,0,0,0.051737,8,False http://www.fao.org/aos/agrovoc#c_5007,Music,0.023964,2.767474,0.066319,0.034104,0.950489,0.916385,0,1,0,1,0,0,0,0,0.05086,9,False http://www.fao.org/aos/agrovoc#c_3676,Households,0.00842,0.311905,0.002626,0.057215,0.693442,0.636227,17,1,0,2,0,0,0,0,0.050585,10,False -- 0.0 correct
No existing topics for data/user/test/w-shakespeare.txt
-- Reading instance
-- Converting instance for document w-shakespeare
---- Extracting candidates...
344 candidates
0 positive; 344 negative instances
-- Processing document: w-shakespeare
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_4733,Men,0.014979,0.415127,0.006218,0.025042,0.961639,0.936597,10,1,0,2,0,0,0,0,0.174341,1,False http://www.fao.org/aos/agrovoc#c_7538,Survival,0.007846,0.633428,0.00497,0.027762,0.646408,0.618646,0,1,0,1,0,0,0,0,0.109446,2,False http://www.fao.org/aos/agrovoc#c_4629,Marriage,0.003566,2.193386,0.007822,0.072407,0.182705,0.110298,0,1,0,1,0,0,0,0,0.108855,3,False http://www.fao.org/aos/agrovoc#c_35747,Presses,0.044936,0.485508,0.021817,0.699025,0.928531,0.229507,2,1,0,2,0,0,0,0,0.094038,4,False http://www.fao.org/aos/agrovoc#c_6173,Pressing,0.045649,0.444686,0.020299,0.313168,0.928531,0.615363,2,1,0,2,0,0,0,0,0.094038,5,False http://www.fao.org/aos/agrovoc#c_5168,Newspapers,0.045649,0.442688,0.020208,0.660383,0.928531,0.268149,2,1,0,0,0,0,0,0,0.093731,6,False http://www.fao.org/aos/agrovoc#c_4253,Legislation,0.010699,0.158004,0.00169,0.067811,0.837085,0.769274,32,1,0,0,0,0,0,0,0.059401,7,False http://www.fao.org/aos/agrovoc#c_3451,Gynoecium,0.012839,1.208255,0.015513,0.050835,0.877978,0.827143,1,1,0,0,0,0,0,0,0.054133,8,False http://www.fao.org/aos/agrovoc#c_8421,Wood,0.009272,0.468979,0.004349,0.340555,0.930501,0.589946,17,1,0,1,0,0,0,0,0.049985,9,False http://www.fao.org/aos/agrovoc#c_3560,Henan,0.013552,4.174387,0.056572,0.624554,0.854718,0.230163,0,1,0,0,0,0,0,0,0.041138,10,False -- 0.0 correct
No existing topics for data/user/test/w-nabokov.txt
-- Reading instance
-- Converting instance for document w-nabokov
---- Extracting candidates...
328 candidates
0 positive; 328 negative instances
-- Processing document: w-nabokov
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_2815,Fathers,0.019108,1.914362,0.03658,0.002008,0.944403,0.942395,0,1,0,1,0,0,0,0,0.42241,1,False http://www.fao.org/aos/agrovoc#c_24920,World,0.007279,0.112509,0.000819,0.040663,0.673318,0.632656,10,1,0,2,0,0,0,0,0.213077,2,False http://www.fao.org/aos/agrovoc#c_2785,Families,0.018198,0.362185,0.006591,0.006275,0.927836,0.921561,5,1,0,3,0,0,0,0,0.171833,3,False http://www.fao.org/aos/agrovoc#c_5168,Newspapers,0.028207,0.442688,0.012487,0.137299,0.90261,0.765311,2,1,0,1,0,0,0,0,0.089105,4,False http://www.fao.org/aos/agrovoc#c_8364,'Western Europe',0.00091,2.084583,0.001897,0.121988,0.121988,0,2,2,0,7,0,0,0,0,0.087908,5,False
http://www.fao.org/aos/agrovoc#c_35747,Presses,0.027298,0.485508,0.013253,0.484438,0.90261,0.418173,2,1,0,2,0,0,0,0,0.086038,6,False http://www.fao.org/aos/agrovoc#c_4740,'Mental ability',0.015469,1.31696,0.020372,0.012425,0.941265,0.92884,1,1,0,1,0,0,0,0,0.070909,7,False
http://www.fao.org/aos/agrovoc#c_6173,Pressing,0.027298,0.444686,0.012139,0.484438,0.90261,0.418173,2,1,0,2,0,0,0,0,0.069631,8,False http://www.fao.org/aos/agrovoc#c_16086,Management,0.00182,0.073122,0.000133,0.222264,0.222139,-0.000126,11,2,0,4,0,0,0,0,0.06493,9,False http://www.fao.org/aos/agrovoc#c_916,Biographies,0.009099,4.579852,0.041673,0.036145,0.755146,0.719001,0,1,0,1,0,0,0,0,0.05086,10,False -- 0.0 correct
No existing topics for data/user/test/a-cover-crop.txt
-- Reading instance
-- Converting instance for document a-cover-crop
---- Extracting candidates...
429 candidates
0 positive; 429 negative instances
-- Processing document: a-cover-crop
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_1936,'Cover plants',0.041667,1.986465,0.082769,0,0.991353,0.991353,0,2,0,2,0,0,0,0,0.352947,1,False
http://www.fao.org/aos/agrovoc#c_3364,'Grassland management',0.000641,2.382628,0.001527,0.156767,0.156767,0,4,3,0,0,0,0,0,0,0.288163,2,False
http://www.fao.org/aos/agrovoc#c_1972,Crops,0.062179,0.229574,0.014275,0.000376,0.991729,0.991353,7,1,0,8,0,0,0,0,0.260863,3,False http://www.fao.org/aos/agrovoc#c_926,Biomass,0.003846,1.203973,0.004631,0.354135,0.979323,0.625188,14,1,0,1,0,0,0,0,0.208716,4,False http://www.fao.org/aos/agrovoc#c_5319,Oesophagus,0.061538,0.247476,0.015229,0.000376,0.991729,0.991353,7,1,0,0,0,0,0,0,0.160863,5,False http://www.fao.org/aos/agrovoc#c_2571,Engineering,0.001923,0.688032,0.001323,0.02218,0.02218,0,6,2,0,1,0,0,0,0,0.127848,6,False http://www.fao.org/aos/agrovoc#c_7176,'Soil management',0.000641,2.204947,0.001413,0.040602,0.040602,0,5,2,0,5,0,0,0,0,0.126051,7,False
http://www.fao.org/aos/agrovoc#c_6148,'Poultry farming',0.000641,3.193558,0.002047,0.033459,0.033459,0,4,2,0,2,0,0,0,0,0.124415,8,False
http://www.fao.org/aos/agrovoc#c_8347,Weeds,0.013462,1.01032,0.0136,0.043609,0.733083,0.689474,2,1,0,3,0,0,0,0,0.111825,9,False http://www.fao.org/aos/agrovoc#c_8346,Weeding,0.013462,1.01032,0.0136,0.043609,0.733083,0.689474,2,1,0,2,0,0,0,0,0.109115,10,False -- 0.0 correct
No existing topics for data/user/test/a-agriculture.txt
-- Reading instance
-- Converting instance for document a-agriculture
---- Extracting candidates...
978 candidates
0 positive; 978 negative instances
-- Processing document: a-agriculture
-- Keyphrases and feature values:
http://www.fao.org/aos/agrovoc#c_2807,'Farming systems',0.01601,0.208823,0.003343,0.0058,0.953272,0.947472,12,1,0,8,0,0,0,0,0.228118,1,False
http://www.fao.org/aos/agrovoc#c_1666,'Climatic change',0.003958,1.776492,0.007031,0.034638,0.865861,0.831223,8,2,0,2,0,0,0,0,0.22588,2,False
http://www.fao.org/aos/agrovoc#c_438,'Animal products',0.002878,0.903552,0.002601,0.033004,0.780819,0.747815,16,2,0,7,0,0,0,0,0.22089,3,False
http://www.fao.org/aos/agrovoc#c_3136,Fuels,0.002878,0.611922,0.001761,0.023854,0.638265,0.614411,3,1,0,8,0,0,0,0,0.153781,4,False http://www.fao.org/aos/agrovoc#c_5976,'Plant production',0.002159,0.737716,0.001592,0.00384,0.876889,0.87305,21,2,0,7,0,0,0,0,0.150206,5,False
http://www.fao.org/aos/agrovoc#c_203,Agriculture,0.046771,0.037888,0.001772,0.00049,0.968793,0.968303,19,1,0,8,0,0,0,0,0.148071,6,False http://www.fao.org/aos/agrovoc#c_16165,Biotechnology,0.00072,1.72482,0.001241,0.033657,0.934809,0.901152,6,1,0,5,0,0,0,0,0.137313,7,False http://www.fao.org/aos/agrovoc#c_1971,'Cropping systems',0.00072,1.776492,0.001278,0.032677,0.216159,0.183482,6,2,0,12,0,0,0,0,0.124016,8,False
http://www.fao.org/aos/agrovoc#c_8325,'Water resources',0.001079,1.060872,0.001145,0.020341,0.800915,0.780573,10,2,0,5,0,0,0,0,0.123271,9,False
http://www.fao.org/aos/agrovoc#c_3635,History,0.003958,0.745791,0.002952,0.007679,0.955396,0.947717,2,1,0,0,0,0,0,0,0.117205,10,False -- 0.0 correct
-- Evaluation results based on 10 documents:
Avg. number of correct keyphrases per document: 0 +/- 0
Precision: 0 +/- 0
Recall: 0 +/- 0
F-Measure: NaN