kappa-users

What is DMT? Have you ever longed to disconnect from the outside world and get buried in your

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Hi James, Indeed molecular ambiguity is not easy to deal with. As far as I know, nothing that

Hi folks, I've added some advanced contact map rendering support to my tool suite, KaSaAn. While

Hi folks, I maintain a Notepad++ language definition for the Kappa language, focused on syntax

UPDATE: Walter informed me that there's something going on with the Harvard servers in which the

Hi Octave! Yes, this is implemented and works as expected. The manual maintainers will someday update

Hello, I think Kappa models rules using binding terms like this: Rule/Reaction Differential Equations

Sorry for the lag in responding… > I believe the activity of a rule could, in the past, be

Hi Matheus, It's here -> https://github.com/Kappa-Dev/Kappa-Dev.github.io/tree/master/

Matheus Gimenez Fernandes <mgimenez...@gmail.com> writes: > I'm new to Kappa

The stochastic simulation has no time step, as Walter noted, but KaSim does have a time step setting

I am running Ubuntu 19 and can't get the GUI to work. The executables in resources work fine (eg,

Hi all, Extremely late reply indeed, Sorry. - Dealing with heat is indeed doable with tokens. Despite

On 8/15/19 5:41 PM, Héctor F wrote: My understanding of graph databases like Google's

You can get this information from the "variables" entry in the object returned by "

hi ricardo, thanks for the suggestion. in the meantime i started an issue on the kappasim github, and

Hi all, The pull request has been submitted to the Pygments package. However, it seems development

Ok thanks for the example. I see that it could cause trouble. In that case, the transition { S(x{u/p}

Yes please I would love to have a look at the manuscript if that's ok with you. Thanks! On Wed,

Hi Valentin, Thank you for Topkappy. I tried it for a new project and so far it works great. I was

BioNetGen implements a partitioned leaping algorithm (a variation of tau leaping): https://www.ncbi.

Hi there, Before I write my own and/or create a pull request, I was wondering if there is a

Exactly, Jérôme Le lundi 19 novembre 2018 12:23:06 UTC+1, David Sterratt a écrit : I think the

Hi, There is no known way! I'm not sure it would even do the speedup you expect: - GPU cores have

Miran, I'll get back to you outside the kappa-users group, since your question is not directly