abundace.tsv file looks different

[Michela Francesconi]

Hi, I would like to get your abundance.tsv of the kallisto quant command, but when I sent the command, the result is very different (I attach the photo ). I don't understand what I did wrong because the other files are correct and at the time of execution I didn't get any error.

[Pall Melsted]

It seems like the index was generated for the FASTQ input file rather than a FASTA file containing the sequences of the transcripts.

Regenerated the index and the quant command should give better output

On Tue, Feb 28, 2023 at 7:04 PM Michela Francesconi <michelafr...@gmail.com> wrote:

Hi, I would like to get your abundance.tsv of the kallisto quant command, but when I sent the command, the result is very different (I attach the photo ). I don't understand what I did wrong because the other files are correct and at the time of execution I didn't get any error.

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