kallisto index -i genome.idx genome.fa
it gives me the following:
[build] loading fasta file genome.fa
[build] k-mer length: 31
[build] warning: clipped off poly-A tail (longer than 10)
from 91 target sequences
[build] warning: replaced 78088275 non-ACGUT characters in the input sequence
with pseudorandom nucleotides
[build] counting k-mers ...
Job 3149667.1 memory limit 128G exceeded.
Killed
The last two lines are the SGE cluster kicking me off for using more than my allotted 128G of RAM! Any idea what could be causing this problem?
Using 0.46.1.
Thanks,
Sam