Can't install IRSTLM

[anuraag advani]

I can't seem IRSTLM to install, first I was getting the error #include_next <stdio.h> so I changed that to  #include_next </usr/include/stdio.h>, now when I use

./extras/install_irstlm.sh

I get the followint error

****() Assuming IRSTLM is already installed. Please delete

****() the directory ./irstlm if you need us to download

****() the sources again.

Calling /usr/bin/libtoolize 

Calling /usr/bin/aclocal...

Calling /usr/bin/autoconf...

Calling /usr/bin/automake --add-missing...

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... /usr/bin/mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking for g++... g++

checking whether the C++ compiler works... yes

checking for C++ compiler default output file name... a.out

checking for suffix of executables... 

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C++ compiler... yes

checking whether g++ accepts -g... yes

checking for style of include used by make... GNU

checking dependency style of g++... gcc3

checking how to run the C++ preprocessor... g++ -E

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking how to print strings... printf

checking for gcc... gcc

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking dependency style of gcc... gcc3

checking for a sed that does not truncate output... /usr/bin/sed

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for fgrep... /usr/bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 1572864

checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop

checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for ar... ar

checking for archiver @FILE support... @

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for sysroot... no

checking for a working dd... /usr/bin/dd

checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1

checking for mt... no

checking if : is a manifest tool... no

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

checking how to run the C++ preprocessor... g++ -E

checking for ld used by g++... /usr/bin/ld -m elf_x86_64

checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes

checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking for g++ option to produce PIC... -fPIC -DPIC

checking if g++ PIC flag -fPIC -DPIC works... yes

checking if g++ static flag -static works... no

checking if g++ supports -c -o file.o... yes

checking if g++ supports -c -o file.o... (cached) yes

checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking dynamic linker characteristics... (cached) GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking for pdflatex... pdflatex

checking for bibtex... bibtex

configure: trace disabled (default), most regression tests will fail

configure: generation of debugging symbols disabled (default), compilation without "-g", only "-O2"

configure: profiling disabled (default)

configure: train-caching disabled (default)

configure: caching disabled (default)

configure: interpolated search disabled (default)

configure: optimization disabled (default)

configure: Building non-threaded irstlm.

checking getopt.h usability... yes

checking getopt.h presence... yes

checking for getopt.h... yes

checking that generated files are newer than configure... done

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating scripts/Makefile

config.status: creating config.h

config.status: config.h is unchanged

config.status: executing depfiles commands

config.status: executing libtool commands

configure: The software will be installed into /home/anuraag/kaldi/tools/irstlm

make  all-recursive

make[1]: Entering directory '/home/anuraag/kaldi/tools/irstlm'

Making all in src

make[2]: Entering directory '/home/anuraag/kaldi/tools/irstlm/src'

/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..    -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES  -DMYCODESIZE=3  -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo util.cpp

libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DMYCODESIZE=3 -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.cpp -o util.o

Makefile:721: recipe for target 'util.lo' failed

make[2]: Leaving directory '/home/anuraag/kaldi/tools/irstlm/src'

Makefile:406: recipe for target 'all-recursive' failed

make[1]: Leaving directory '/home/anuraag/kaldi/tools/irstlm'

Makefile:338: recipe for target 'all' failed

Making install in src

make[1]: Entering directory '/home/anuraag/kaldi/tools/irstlm/src'

/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..    -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES  -DMYCODESIZE=3  -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo util.cpp

libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DMYCODESIZE=3 -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.cpp -o util.o

Makefile:721: recipe for target 'util.lo' failed

make[1]: Leaving directory '/home/anuraag/kaldi/tools/irstlm/src'

Makefile:406: recipe for target 'install-recursive' failed

Please help thanks

[Daniel Povey]

As a general rule you shouldn't change things and show us the error after you changed things, we want to see the original error.  Please remove the irstlm directory, install from scratch, and show the original error.

Dan

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[anuraag advani]

This is the original error

[anuraag@dyn-160-39-195-65 tools]$ ./extras/install_irstlm.sh 

****() Installing IRSTLM

****() Assuming IRSTLM is already installed. Please delete

****() the directory ./irstlm if you need us to download

****() the sources again.

Calling /usr/bin/libtoolize 

Calling /usr/bin/aclocal...

aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'

autom4te: cannot open autom4te.cache/requests: Permission denied

aclocal: error: echo failed with exit status: 1

aclocal failed

Calling /usr/bin/libtoolize 

Calling /usr/bin/aclocal...

aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'

autom4te: cannot open autom4te.cache/requests: Permission denied

aclocal: error: echo failed with exit status: 1

aclocal failed

./configure: line 2023: config.log: Permission denied

./configure: line 2033: config.log: Permission denied

make  all-recursive

make[1]: Entering directory '/home/anuraag/kaldi/tools/irstlm'

Making all in src

make[2]: Entering directory '/home/anuraag/kaldi/tools/irstlm/src'

/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..    -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES  -DMYCODESIZE=3  -MT dictionary.lo -MD -MP -MF .deps/dictionary.Tpo -c -o dictionary.lo dictionary.cpp

rm: cannot remove 'dictionary.o': Permission denied

rm: cannot remove 'dictionary.lo': Permission denied

libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DMYCODESIZE=3 -MT dictionary.lo -MD -MP -MF .deps/dictionary.Tpo -c dictionary.cpp -o dictionary.o

In file included from /usr/include/c++/6.1.1/ext/string_conversions.h:41:0,

                 from /usr/include/c++/6.1.1/bits/basic_string.h:5402,

                 from /usr/include/c++/6.1.1/string:52,

                 from /usr/include/c++/6.1.1/bits/locale_classes.h:40,

                 from /usr/include/c++/6.1.1/bits/ios_base.h:41,

                 from /usr/include/c++/6.1.1/ios:42,

                 from /usr/include/c++/6.1.1/ostream:38,

                 from /usr/include/c++/6.1.1/iostream:39,

                 from mfstream.h:26,

                 from dictionary.cpp:23:

/usr/include/c++/6.1.1/cstdlib:75:25: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

                         ^

compilation terminated.

rm: cannot remove 'dictionary.o': Permission denied

rm: cannot remove 'dictionary.lo': Permission denied

Makefile:721: recipe for target 'dictionary.lo' failed

make[2]: *** [dictionary.lo] Error 1

make[2]: Leaving directory '/home/anuraag/kaldi/tools/irstlm/src'

Makefile:406: recipe for target 'all-recursive' failed

make[1]: *** [all-recursive] Error 1

make[1]: Leaving directory '/home/anuraag/kaldi/tools/irstlm'

Makefile:338: recipe for target 'all' failed

make: *** [all] Error 2

Making install in src

make[1]: Entering directory '/home/anuraag/kaldi/tools/irstlm/src'

/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..    -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES  -DMYCODESIZE=3  -MT dictionary.lo -MD -MP -MF .deps/dictionary.Tpo -c -o dictionary.lo dictionary.cpp

rm: cannot remove 'dictionary.o': Permission denied

rm: cannot remove 'dictionary.lo': Permission denied

libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -isystem/usr/include -W -Wall -ffor-scope -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DMYCODESIZE=3 -MT dictionary.lo -MD -MP -MF .deps/dictionary.Tpo -c dictionary.cpp -o dictionary.o

In file included from /usr/include/c++/6.1.1/ext/string_conversions.h:41:0,

                 from /usr/include/c++/6.1.1/bits/basic_string.h:5402,

                 from /usr/include/c++/6.1.1/string:52,

                 from /usr/include/c++/6.1.1/bits/locale_classes.h:40,

                 from /usr/include/c++/6.1.1/bits/ios_base.h:41,

                 from /usr/include/c++/6.1.1/ios:42,

                 from /usr/include/c++/6.1.1/ostream:38,

                 from /usr/include/c++/6.1.1/iostream:39,

                 from mfstream.h:26,

                 from dictionary.cpp:23:

/usr/include/c++/6.1.1/cstdlib:75:25: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

                         ^

compilation terminated.

rm: cannot remove 'dictionary.o': Permission denied

rm: cannot remove 'dictionary.lo': Permission denied

Makefile:721: recipe for target 'dictionary.lo' failed

make[1]: *** [dictionary.lo] Error 1

make[1]: Leaving directory '/home/anuraag/kaldi/tools/irstlm/src'

Makefile:406: recipe for target 'install-recursive' failed

make: *** [install-recursive] Error 1

***() Error compiling IRSTLM. The error messages could help you 

***() in figuring what went wrong.

find: ‘/home/anuraag/kaldi/tools/sequitur-g2p/lib’: No such file or directory

[Daniel Povey]

It looks to me like there is some weird permissions or ownership issue, like maybe you originally installed it with 'sudo' and then you failed to clean up.  `ls -l` on the files and directories concerned will help you figure this out.

[Daniel Povey]

Also, now that I see the full context of the original problem, I see that it's not an IRSTLM issue, it's a problem that happens in a system header.  You should never have to change system headers.

It looks like something went wrong in system space, e.g. an issue with your Linux distribution, or you somehow installed combinations of packages that were not compatible.  If I were you I'd install the system from scratch, and steer clear of trying to install multiple versions of gcc or g++.  Just install as

apt-get install g++

or whatever, don't try to get fancy

Dan

[anuraag advani]

The only system header I changed was the one mentioned above, but I was getting the error before that. I will still install the system from scratch and see if that helps. Thanks.

[Jan Trmal]

I think your issue is really something is messed up with your system. not sure what. But you shouldn't get complaints about missing system libraries or not being able to write to directories you've created.

Perhaps your disk is dying?

y.

On Sat, Nov 19, 2016 at 8:40 PM, anuraag advani <anuraag...@gmail.com> wrote:

The only system header I changed was the one mentioned above, but I was getting the error before that. I will still install the system from scratch and see if that helps. Thanks.

[Jan Trmal]

BTW, what OS do you have? If linux, what distribution? y.