"sh: 1: qsub: not found" Error while using GPU

[Amol Bole]

I am trying to build HMM-GMM model by using GPU for my own data, Nvidia drivers are also installed properly, CUDA 7.5 is also installed properly but I am getting following error while running.

umar@R730_UP:/data/shushant/speech_to_text/speech_combine_ng_dnn$ ./myrun.sh 

============================================================================

         MFCC Feature Extration & CMVN for Training and Test set           

============================================================================

steps/make_mfcc.sh --cmd queue.pl --nj 4 data/train exp/make_mfcc/train mfcc

utils/validate_data_dir.sh: Successfully validated data-directory data/train

steps/make_mfcc.sh: [info]: no segments file exists: assuming wav.scp indexed by utterance.

queue.pl: Error submitting jobs to queue (return status was 32512)

queue log file is exp/make_mfcc/train/q/make_mfcc_train.log, command was qsub -v PATH -cwd -S /bin/bash -j y -l arch=*64* -o exp/make_mfcc/train/q/make_mfcc_train.log   -t 1:4 /data/shushant/speech_to_text/speech_combine_ng_dnn/exp/make_mfcc/train/q/make_mfcc_train.sh >>exp/make_mfcc/train/q/make_mfcc_train.log 2>&1

Output of qsub was: sh: 1: qsub: not found

I opened the log file and error is "sh: 1: qsub: not found"

Here is the ./configure command output.

umar@R730_UP:/data/shushant/speech_to_text/kaldi/src$ ./configure --cudatk-dir=/usr/local/cuda-7.5/

Configuring ...

Checking compiler g++ ...

Checking OpenFst library in /data/shushant/speech_to_text/kaldi/tools/openfst ...

Checking cub library in /data/shushant/speech_to_text/kaldi/tools/cub ...

Doing OS specific configurations ...

On Linux: Checking for linear algebra header files ...

Using ATLAS as the linear algebra library.

Successfully configured ATLAS with ATLASLIBS=/usr/lib/libatlas.so.3 /usr/lib/libf77blas.so.3 /usr/lib/libcblas.so.3 /usr/lib/liblapack_atlas.so.3

Using CUDA toolkit /usr/local/cuda-7.5 (nvcc compiler and runtime libraries)

Info: configuring Kaldi not to link with Speex (don't worry, it's only needed if you

intend to use 'compress-uncompress-speex', which is very unlikely)

SUCCESS

To compile: make clean -j; make depend -j; make -j

 ... or e.g. -j 10, instead of -j, to use a specified number of CPUs.

I attached here my run.sh and cmd.sh. Can you help me how to use GPU for this training?

[Astik Biswas]

Hello, 

use run.pl instead of queue.pl while running on single machine.

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[Amol Bole]

in cmd.sh or in run.sh or in both I have to use run.pl?

[Astik Biswas]

Yes, you have to change cmd.sh and you need to use run.pl instead of queue.pl.

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[Amol Bole]

Getting same error if I am replacing in only cmd.sh

[Jan Trmal]

The suggestion was right -- you will have to find all places where queue.pl is in your scripts and replace it by run.pl

y.

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[Amol Bole]

Running perfectly ... Thanks for your suggestion...