how to "run all cells" by programming in jupyter notebook?

[MuJohnny chan]

Hi all,

Is it possible to trigger "run all cells" in jupyter notebook via programming a script? In details, I have programmed a python notebook and it could be run by clicking "run all cells". However, I do not want to use the button and instead programming is preferred.  Then how to do? Is there any REST API for jupyter to run all cells? Any suggestions would be highly appreciated!

best,

johnny

[M Pacer]

You could use

jupyter nbconvert <name of notebook> --to notebook --execute --in-place

But that can lead to weird behaviour if that is a command inside the notebook itself. Because when it runs all cells it runs that cell which causes it to run all cells again and again forever.

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[Paul Hobson]

I'd checkout runipy.

Github: https://github.com/paulgb/runipy

conda-forge: https://anaconda.org/conda-forge/runipy

On Fri, Oct 20, 2017 at 9:18 AM, M Pacer <mpa...@berkeley.edu> wrote:

You could use

jupyter nbconvert <name of notebook> --to notebook --execute --in-place

But that can lead to weird behaviour if that is a command inside the notebook itself. Because when it runs all cells it runs that cell which causes it to run all cells again and again forever.

On Fri, Oct 20, 2017 at 04:19 MuJohnny chan <chenm...@gmail.com> wrote:

Hi all,

Is it possible to trigger "run all cells" in jupyter notebook via programming a script? In details, I have programmed a python notebook and it could be run by clicking "run all cells". However, I do not want to use the button and instead programming is preferred.  Then how to do? Is there any REST API for jupyter to run all cells? Any suggestions would be highly appreciated!

best,

johnny

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