Bibliography management for Jupyter

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Christina Lee

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Aug 8, 2018, 2:38:40 AM8/8/18
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For those of us who use Jupyter to communicate and document research, could there be a better way to keep track of citations then copy-pasting links and pre-formatted citations?  

If we could have bibtex run on the markdown cells, and then generate a bibliography for the whole notebook, scientists like myself would find citation management much easier.  

Is this feasible?  I'd find it incredibly useful in my work.

Christina Lee 

Doug Blank

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Aug 8, 2018, 3:19:45 AM8/8/18
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Thomas Kluyver

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Aug 9, 2018, 2:43:43 PM8/9/18
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If you use Zotero, or you'd be happy to use it for this, you could also look at cite2c:


Fair warning, though, it's something of a work-in-not-much-progress.

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Christina Lee

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Aug 10, 2018, 4:50:14 AM8/10/18
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Did fiddle with the Calysto extension for a little bit, but didnt quite get it to work in the short time I spent working on it.  I do use Zotero, so I`ll take a look at the other one as well.


On Friday, August 10, 2018 at 3:43:43 AM UTC+9, takowl wrote:
If you use Zotero, or you'd be happy to use it for this, you could also look at cite2c:


Fair warning, though, it's something of a work-in-not-much-progress.
On 8 August 2018 at 09:19, Doug Blank <doug....@gmail.com> wrote:
You might find calysto document tools handy:


Install instructions here:


Some user instructions here:

https://jupyter.brynmawr.edu/services/public/dblank/Jupyter%20Notebook%20Users%20Manual.ipynb#5.-Bibliographic-Support

On Wednesday, August 8, 2018 at 2:38:40 AM UTC-4, Christina Lee wrote:
For those of us who use Jupyter to communicate and document research, could there be a better way to keep track of citations then copy-pasting links and pre-formatted citations?  

If we could have bibtex run on the markdown cells, and then generate a bibliography for the whole notebook, scientists like myself would find citation management much easier.  

Is this feasible?  I'd find it incredibly useful in my work.

Christina Lee 

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