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A possible mistake is the following: create a variable later in the code, after some error message but forget to put the cell in the proper position in the code.
Then, if when you run the code top-down, after restarting the kernel, that variable won't be defined because its cell is down to the end of the notebook, after it's first mentioned.
Hope this helps.
No, you just need to execute the cells again in the same order to recreate the variables. If you have deleted cells you cannot reproduce the original result.
Martin
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