Links in README.md file are broken when it was converted by jsdoc

[LIZ Nakano]

Hello everyone,

I am using jsdoc to create javascript documents.  I added markdown plugin.  However, the links in the markdown file are broken.

I have a work directory

 workDir/

   README.md

   docs/something.md

   jsdoc/

When the README.md is included in the jsconfig.json file, the jsdoc generated the javascript documents and put in the out directory jsdoc/.   However, the links in the REDME.md are all broken.

For example, in the README.md file, there is a link:

   See [something.md] (docs/something.md)

When the link  [something.md] is clicked, it showed 404 Not Found error because the link translated to jsdoc/docs/something.md.   In jsdoc directory, there is no docs

directory.  

Anyone knows how to fix this problem?  Any help is highly appreciated.  

Thanks!

Here is my configuration file:

{
    "tags": {
        "allowUnknownTags| ": true,
        "dictionaries": ["jsdoc","closure"]
    },
    "source": {
        "include": [
           "src/firefly/js/api/",
           "src/firefly/js/tables/TableUtil.js",
           "src/firefly/js/charts/XYPlotCntlr.js",
           "src/firefly/js//visualize/CsysConverter.js",
           "src/firefly/js/visualize/DrawLayerCntlr.js"
          // ,"src/firefly/js/charts/HistogramCntlr.js"
            ,"README.md"

        ],
      "exclude": [
          //"src/firefly/js/api/ApiBuild.js"
       ],
        //include .js, .jsdoc and jsx files
        "includePattern": ".+\\.js(doc)?|(x)$",
         //Any file starting with an underscore or in a directory starting with an underscore will be ignored
        "excludePattern": "(^|\\/|\\\\)_"
    },

    "plugins": [
       "plugins/markdown",
       "plugins/summarize"
    ],

   "markdown" : {
    "idInHeadings" : true
   },

  "jsx": {
        "extensions": ["js", "jsx"]
    },
   "staticFiles": {
        "include": ["./docs"],
        "exclude": ["./docs/firefly-api-code-examples.md"],
        "includePattern": ".+\\.md?$",
       // "excludePattern": "(^|\\/|\\\\)_",
        "recursive": true//,
        //"recursiveLevel": 2,
    },

    "templates": {
          "minami": {
         // "default": {
            "staticFiles": {
                "include": ["./docs/"],
                "exclude": ["./docs/firefly-api-code-examples.md"],
               // "includePattern": ".+\\.md?$",
                // "excludePattern": "(^|\\/|\\\\)_",
                "recursive": true//,
                //"recursiveLevel": 2,
            }

        }
    },
    "opts": {
        "template": "node_modules/minami", //use the minami template insetad of the default
       // "template":  "templates/default",//default",  // same as -t templates/default
       "encoding": "utf8",               // same as -e utf8
        "destination": "./jsdoc/",          // same as -d ./out/
        "recurse": true , //,             // same as -r
        "tutorials": "./tutorial/", // same as -u path/to/tutorials
        "access": "all"   //same as -a  <value>, values are all, public, private etc

    },
    "templates": {
        "cleverLinks": false,
        "monospaceLinks": false,
        "default": {
            "outputSourceFiles": true
        }
    }
}