My name is Hemil Panchiwala, a 2nd-year undergraduate CSE student at the Indian Institute of Technology, Roorkee, India. I am currently participating in the Google Summer of Code 2020 with NRNB as a mentoring organization.
My project is “Simulation of systems biology models in Java: support for new features” mentored by Dr. Andreas Dräger, Dr. Matthias König, Mykola Zakharchuk, and Shalin Shah.
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
My project aims to update SBSCL. We aim
to support the SBML Level 3 Version 2 and the FBC Version 3
add the stochastic simulations in SBSCL
improve support for the simulation of SBML models with comp extension
testing SBSCL against the SBML Test Suite, BioModels Database as well as BiGG Models database, and
update the documentation for the SBSCL repository.
More details about my project can be found in my proposal [Link].
Project Idea: https://github.com/nrnb/GoogleSummerOfCode/issues/141
GitHub repository: https://github.com/draeger-lab/SBSCL
Project Blog: https://gsoc20hemil.blogspot.com/
Thanks and regards