biojava3-alignment and phylo

[Raphael André Bauer]

@andreas,
we are advancing :) biojava3-core is already crossompiling somehow and
we wanted to include biojava3-alignment... but there is another
dependency...: biojava3-phylo (that has in turn a dependency on forester).

how far is that used in biojava3-alignment? - or do you think we can
ignore that dependency when our goal is to crosscompile much of core
and alignment?

thanks,

ra

<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava3-phylo</artifactId>
<version>3.0-SNAPSHOT</version>
<scope>compile</scope>
</dependency>
</dependencies>

[Andreas Prlic]

nice progress!

we are advancing :) biojava3-core is already crossompiling somehow and
we wanted to include biojava3-alignment... but there is another
dependency...: biojava3-phylo (that has in turn a dependency on forester).

ah, yes. Just to get Needleman Wunsch running, you won't need phylo and forester, so you can probably exclude those dependencies...

You will only need this if you want to run multiple sequence alignments...

Andreas

 

how far is that used in biojava3-alignment? - or do you think we can
ignore that dependency when our goal is to crosscompile much of core
and alignment?

thanks,

ra

   <dependency>
     <groupId>org.biojava</groupId>
     <artifactId>biojava3-phylo</artifactId>
     <version>3.0-SNAPSHOT</version>
     <scope>compile</scope>
   </dependency>
 </dependencies>

--
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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